Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 9.8e-250 866.3 430 100.0
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.8e-163 579.7 441 67.8
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 8.8e-158 560.8 478 60.3
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.3e-156 557.0 468 61.1
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.8e-156 555.8 468 60.9
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 6.3e-156 554.7 479 61.6
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.8e-155 553.1 466 61.8
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 7.0e-155 551.2 467 60.6
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 4.5e-154 548.5 472 60.0
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 2.3e-153 546.2 461 60.3
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 5.5e-152 541.6 476 59.0
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.8e-150 536.6 499 56.9
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 5.2e-150 535.0 466 61.6
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 1.3e-148 530.4 446 59.6
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.2e-146 523.9 472 57.6
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.7e-146 522.7 482 56.6
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 3.3e-144 515.8 482 56.0
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 6.8e-142 508.1 481 55.3
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 1.5e-141 506.9 476 55.7
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 5.8e-141 505.0 487 54.0
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 9.8e-141 504.2 478 56.1
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 2.9e-140 502.7 487 54.2
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 3.7e-140 502.3 492 54.1
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 5.4e-139 498.4 432 59.3
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.6e-138 496.9 428 57.7
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 6.0e-138 495.0 428 57.2
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 3.0e-137 492.7 457 56.5
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 3.9e-137 492.3 544 49.3
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 2.1e-135 486.5 435 58.4
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 1.4e-134 483.8 445 57.1
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 2.3e-134 483.0 436 57.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 4.0e-134 482.3 549 48.3
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.2e-133 480.7 433 56.4
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 2.6e-133 479.6 434 56.7
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 4.9e-132 475.3 431 55.0
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 8.3e-132 474.6 493 50.9
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.4e-131 471.9 456 53.9
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.6e-130 470.3 468 54.1
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 7.8e-130 468.0 436 56.4
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 3.0e-129 466.1 455 54.9
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 5.1e-129 465.3 528 49.2
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.5e-128 463.8 431 55.2
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.1e-127 459.9 351 63.8
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 1.8e-126 456.8 485 52.2
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.3e-126 456.4 405 59.3
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 5.2e-126 455.3 481 49.3
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 6.8e-126 454.9 442 53.6
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.5e-125 453.8 449 51.4
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.5e-125 453.8 461 51.6
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 2.6e-125 453.0 445 53.9
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 9.9e-125 451.1 485 49.3
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.7e-124 450.3 448 52.2
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.9e-123 446.8 473 50.3
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 4.1e-123 445.7 461 50.5
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 7.1e-123 444.9 438 53.4
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 9.2e-123 444.5 431 53.1
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 1.2e-122 444.1 450 53.6
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.1e-122 443.4 521 46.6
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.6e-122 442.2 449 54.3
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 6.0e-122 441.8 463 51.0
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.0e-121 441.0 463 51.0
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.0e-121 441.0 486 47.7
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 1.7e-121 440.3 591 42.8
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 3.9e-121 439.1 586 42.7
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 5.1e-121 438.7 444 53.4
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 5.6e-120 435.3 447 51.9
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 7.3e-120 434.9 490 49.2
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 3.6e-119 432.6 426 51.4
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.1e-118 431.0 389 56.3
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.4e-118 430.6 589 41.3
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 4.0e-118 429.1 488 48.2
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 4.0e-118 429.1 489 47.9
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 5.2e-118 428.7 604 41.1
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.7e-116 423.7 475 49.7
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.4e-115 419.9 459 49.9
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.2e-115 419.1 475 48.8
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.2e-115 417.9 268 73.5
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 9.2e-115 417.9 539 44.7
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.6e-114 417.2 441 52.2
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 1.6e-114 417.2 398 54.5
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 2.7e-114 416.4 477 47.2
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 2.7e-114 416.4 340 61.5
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.7e-113 413.7 440 50.5
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.1e-112 411.0 317 63.1
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.5e-112 410.6 267 70.8
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.3e-112 409.5 467 49.0
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.1e-110 404.4 470 48.3
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 7.6e-109 398.3 447 47.7
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 2.2e-108 396.7 377 54.9
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 8.4e-108 394.8 370 54.9
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 7.1e-107 391.7 379 54.1
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.2e-106 391.0 480 46.9
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 6.0e-106 388.7 475 45.9
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.0e-105 386.3 243 72.0
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.1e-104 384.4 315 59.0
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.1e-104 384.4 243 72.0
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 7.3e-104 381.7 470 45.3
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 7.3e-104 381.7 437 48.7
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 3.6e-103 379.4 500 44.4
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.5e-101 374.0 418 47.4
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.5e-101 374.0 448 47.1
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.2e-100 370.2 480 45.2
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 8.4e-100 368.2 479 45.3
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.4e-99 367.5 493 44.6
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 3.2e-99 366.3 265 62.6
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.3e-96 355.9 375 52.3
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 4.5e-93 345.9 259 62.5
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.8e-92 342.8 319 54.2
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 9.3e-91 338.2 430 45.8
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.5e-88 330.9 332 53.9
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.2e-87 325.5 406 45.1
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.3e-84 317.8 401 45.9
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.5e-83 313.5 448 43.1
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 1.6e-82 310.8 266 56.0
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 7.4e-80 302.0 342 48.8
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.8e-79 300.1 341 49.6
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 2.8e-79 300.1 591 35.7
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 2.1e-74 283.9 440 40.7
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.5e-72 277.7 199 63.8
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-72 277.7 254 54.3
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 7.4e-72 275.4 284 56.3
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.7e-66 256.9 481 34.9
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.3e-65 253.8 182 63.2
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 6.3e-63 245.7 321 42.4
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 9.1e-62 241.9 264 47.7
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 2.6e-61 240.4 507 32.3
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.9e-51 207.6 238 48.3
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.2e-50 204.9 133 67.7
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 6.6e-36 156.0 427 30.9
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 9.5e-35 152.1 186 48.9
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.2e-34 151.8 183 41.5
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 3.6e-34 150.2 123 56.1
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 3.2e-30 137.1 241 39.0
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 5.4e-30 136.3 144 49.3
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 1.0e-28 132.1 224 40.2
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 4.3e-27 126.7 227 41.4
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.8e-26 124.0 159 43.4
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 3.4e-24 117.1 94 59.6
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 1.9e-22 111.3 74 67.6
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 5.6e-19 99.8 74 62.2
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 7.3e-19 99.4 65 63.1
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 2.8e-18 97.4 90 54.4
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.1e-17 95.5 111 40.5
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 1.8e-17 94.7 63 61.9
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.7e-15 88.2 180 40.6
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 8.3e-15 85.9 99 45.5
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.6e-13 81.6 81 50.6
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.2e-07 61.2 82 39.0
BcaC02g09524 Brassica carinata HOM05D029228 ORTHO05D027443 8.4e-07 59.3 76 46.1
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 3.2e-06 57.4 105 38.1


User provided reference genes

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