Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 9.7e-130 466.8 239 100.0
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 7.7e-103 377.5 245 73.1
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 2.7e-100 369.0 237 72.6
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 6.1e-100 367.9 239 73.2
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.4e-99 366.7 219 77.6
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 5.2e-99 364.8 236 71.6
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 6.7e-99 364.4 219 77.2
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 6.7e-99 364.4 244 70.1
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 7.5e-98 360.9 237 71.7
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 8.2e-97 357.5 223 74.0
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.1e-96 357.1 235 69.8
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.1e-96 357.1 247 67.6
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 1.1e-96 357.1 237 70.0
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 1.4e-96 356.7 233 70.4
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.1e-96 355.1 235 69.8
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 1.2e-95 353.6 228 71.9
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.2e-95 353.6 237 71.3
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 2.0e-95 352.8 243 68.7
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 2.0e-95 352.8 236 69.5
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 3.5e-95 352.1 223 72.6
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 3.5e-95 352.1 238 70.2
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 5.9e-95 351.3 236 69.5
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 7.7e-95 350.9 237 74.7
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 7.7e-95 350.9 222 73.4
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.3e-94 350.1 237 74.3
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 8.5e-94 347.4 226 70.8
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 1.1e-93 347.1 235 68.5
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 3.2e-93 345.5 219 72.1
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 3.2e-93 345.5 224 71.9
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 2.7e-92 342.4 237 67.9
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 3.6e-92 342.0 233 67.0
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 3.6e-92 342.0 219 71.7
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 6.1e-92 341.3 217 71.9
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.0e-91 340.5 225 70.2
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.0e-91 340.5 219 77.6
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 2.3e-91 339.3 236 67.4
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.0e-91 339.0 258 61.6
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.0e-91 339.0 258 61.6
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 5.2e-91 338.2 232 68.5
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 5.2e-91 338.2 231 70.1
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 6.8e-91 337.8 228 78.5
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 8.8e-91 337.4 219 72.1
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 8.8e-91 337.4 247 64.8
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 1.2e-90 337.0 236 65.3
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 1.5e-90 336.7 231 66.2
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.5e-90 336.7 214 71.5
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 2.6e-90 335.9 231 66.2
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 4.4e-90 335.1 229 68.1
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 4.4e-90 335.1 243 67.9
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 4.4e-90 335.1 242 72.3
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 5.7e-90 334.7 217 70.5
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 7.5e-90 334.3 231 66.7
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 2.8e-89 332.4 236 66.1
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 3.7e-89 332.0 217 71.0
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 3.7e-89 332.0 217 71.0
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 3.7e-89 332.0 217 71.0
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 4.8e-89 331.6 233 67.0
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 1.4e-88 330.1 236 65.7
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 1.4e-88 330.1 202 74.8
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.4e-88 330.1 229 65.9
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 5.4e-88 328.2 243 67.9
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 5.4e-88 328.2 230 66.1
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 7.0e-88 327.8 243 67.5
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 9.1e-88 327.4 230 65.7
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 2.0e-87 326.2 228 73.7
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 2.0e-87 326.2 222 66.2
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 4.5e-87 325.1 235 66.0
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 5.9e-87 324.7 226 65.5
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 3.8e-86 322.0 245 62.0
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 6.5e-86 321.2 234 65.4
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 8.6e-86 320.9 234 65.4
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.1e-85 320.5 204 71.6
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 7.2e-85 317.8 226 65.0
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 1.2e-84 317.0 229 64.6
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 3.6e-84 315.5 214 68.2
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 1.4e-83 313.5 214 68.7
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 5.2e-83 311.6 218 64.7
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 8.9e-83 310.8 225 67.6
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 8.9e-83 310.8 239 60.7
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 1.2e-82 310.5 215 66.0
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 3.4e-82 308.9 245 62.4
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 6.3e-81 304.7 214 65.0
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.8e-80 303.1 221 63.8
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.3e-73 280.4 211 64.5
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 4.9e-73 278.5 160 77.5
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 8.3e-73 277.7 169 76.3
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 2.4e-72 276.2 151 80.1
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 7.0e-72 274.6 199 64.3
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 3.5e-71 272.3 156 78.8
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.3e-70 270.4 171 71.9
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.9e-70 268.9 167 73.7
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 1.5e-69 266.9 169 75.1
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 4.3e-69 265.4 242 57.0
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.2e-66 257.3 157 75.2
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 9.2e-64 247.7 157 67.5
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 4.6e-63 245.4 167 68.9
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.2e-58 230.7 169 64.5
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 6.6e-54 214.9 293 40.6
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 5.8e-50 201.8 164 62.8
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 1.3e-49 200.7 224 46.0
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 2.1e-47 193.4 243 39.9
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 3.4e-42 176.0 115 72.2
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 2.3e-38 163.3 108 63.9
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 9.9e-34 147.9 144 43.8
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 2.2e-33 146.7 101 65.3
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 8.4e-33 144.8 189 41.3
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 8.7e-30 134.8 112 60.7
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.1e-16 91.3 96 52.1
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.4e-16 90.9 54 83.3
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 7.1e-16 88.6 56 78.6
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 4.6e-15 85.9 68 57.4
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 6.0e-15 85.5 179 30.7
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 2.3e-14 83.6 131 34.4
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.6e-12 77.4 52 63.5
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.7e-12 76.3 70 48.6
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 5.9e-10 68.9 116 38.8
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 6.5e-09 65.5 120 30.8
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 6.5e-09 65.5 186 28.0
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 1.6e-07 60.8 184 25.5
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 7.9e-07 58.5 125 31.2
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 1.4e-06 57.8 43 60.5


User provided reference genes

Program Settings