Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 4.6e-219 764.2 378 100.0
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 5.7e-209 730.7 379 94.7
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.2e-208 728.8 379 94.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 5.9e-206 720.7 379 92.6
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 5.9e-206 720.7 379 93.1
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 2.9e-205 718.4 379 91.8
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 8.5e-205 716.8 379 91.8
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.4e-204 716.1 379 92.9
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.4e-204 716.1 379 92.9
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 2.5e-204 715.3 379 90.8
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 7.2e-204 713.8 379 92.6
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.2e-203 713.0 379 91.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.2e-203 713.0 379 92.6
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.1e-203 712.2 379 91.6
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 2.7e-203 711.8 379 92.1
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 1.8e-202 709.1 379 91.0
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.0e-202 708.4 378 91.5
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.0e-202 708.4 378 91.5
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 3.0e-202 708.4 379 91.3
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 5.1e-202 707.6 387 90.7
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 5.1e-202 707.6 380 91.6
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 6.7e-202 707.2 379 91.8
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 6.7e-202 707.2 379 90.8
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.1e-201 706.4 379 91.6
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.5e-201 706.1 379 90.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.5e-201 705.3 379 91.8
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 4.3e-201 704.5 379 90.8
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 5.7e-201 704.1 379 91.6
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 7.4e-201 703.7 380 91.3
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 9.7e-201 703.4 379 90.2
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.3e-200 703.0 379 91.0
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.7e-200 702.6 379 90.5
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 2.2e-200 702.2 379 90.5
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 3.7e-200 701.4 346 100.0
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 3.7e-200 701.4 379 90.5
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 3.7e-200 701.4 378 89.4
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 4.8e-200 701.0 379 90.5
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 6.3e-200 700.7 379 89.7
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 6.3e-200 700.7 380 90.0
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 8.2e-200 700.3 379 89.2
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 8.2e-200 700.3 379 89.7
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 8.2e-200 700.3 379 90.5
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 1.1e-199 699.9 380 90.5
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.1e-199 699.9 379 90.0
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.1e-199 699.9 379 90.2
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.4e-199 699.5 379 89.4
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.4e-199 699.5 379 89.7
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.8e-199 699.1 379 89.2
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.8e-199 699.1 381 90.0
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.4e-199 698.7 379 90.0
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 2.4e-199 698.7 379 88.9
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 6.9e-199 697.2 379 89.2
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.2e-198 696.4 379 89.4
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 2.0e-198 695.7 379 89.7
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 2.6e-198 695.3 379 90.0
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 4.5e-198 694.5 379 88.7
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 4.5e-198 694.5 379 89.7
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 7.7e-198 693.7 379 89.7
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 7.7e-198 693.7 379 88.9
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.7e-197 692.6 380 90.0
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.8e-197 691.4 379 87.9
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.1e-196 689.9 379 89.7
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.1e-196 689.9 379 87.9
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.4e-196 689.5 379 89.2
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.9e-196 689.1 379 88.4
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 1.9e-196 689.1 379 87.6
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 2.5e-196 688.7 379 88.4
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 2.5e-196 688.7 379 88.9
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 4.2e-196 688.0 379 89.2
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 4.2e-196 688.0 379 89.2
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 4.2e-196 688.0 367 92.1
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 9.4e-196 686.8 379 88.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.2e-195 686.4 380 87.9
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.6e-195 686.0 379 89.2
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 4.7e-195 684.5 379 87.6
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 6.1e-195 684.1 379 87.9
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 6.1e-195 684.1 367 91.0
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 6.1e-195 684.1 380 87.6
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 6.1e-195 684.1 379 87.3
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 7.9e-195 683.7 379 87.9
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.3e-194 682.2 376 87.2
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 6.7e-194 680.6 379 87.1
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 6.7e-194 680.6 379 86.8
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 8.8e-194 680.2 379 86.5
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 3.3e-193 678.3 379 86.8
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 5.7e-193 677.6 379 86.3
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 9.7e-193 676.8 379 86.3
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 2.2e-192 675.6 391 84.9
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.8e-191 672.5 379 86.8
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 2.4e-191 672.2 368 88.9
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.6e-190 669.5 379 86.0
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 7.7e-190 667.2 379 85.8
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.0e-189 666.8 379 86.0
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 1.0e-189 666.8 379 86.0
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 1.7e-189 666.0 376 85.9
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 2.9e-189 665.2 379 85.8
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 5.0e-189 664.5 379 85.8
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 5.0e-189 664.5 379 85.5
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.5e-188 662.9 379 85.2
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 2.5e-188 662.1 379 86.0
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 7.2e-188 660.6 379 85.8
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 2.7e-187 658.7 379 85.2
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 1.8e-186 656.0 387 83.7
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 6.7e-186 654.1 443 75.2
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.3e-181 639.8 367 85.6
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.2e-181 639.0 379 84.4
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 8.5e-181 637.1 379 83.9
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 3.6e-179 631.7 331 92.1
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 2.6e-177 625.5 378 77.5
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 4.4e-177 624.8 378 79.6
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 1.1e-172 610.1 378 78.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.5e-172 609.0 378 77.5
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 4.2e-172 608.2 378 77.2
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 8.0e-171 604.0 328 89.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 4.9e-160 568.2 327 82.9
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 3.5e-158 562.0 378 70.4
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 7.8e-158 560.8 374 76.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.1e-155 552.7 341 78.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.8e-154 549.7 291 90.7
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 4.4e-153 545.0 378 69.8
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 7.8e-150 534.3 368 70.1
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 8.3e-144 514.2 377 64.2
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 5.2e-138 495.0 287 83.6
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 5.8e-129 464.9 298 78.2
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.8e-128 462.2 390 63.6
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.8e-115 419.5 266 80.8
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 7.4e-108 394.8 280 73.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.2e-72 276.9 336 43.8
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 3.2e-71 273.1 336 43.5
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 4.2e-63 246.1 133 89.5
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 2.3e-53 213.8 118 87.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 3.6e-46 189.9 113 78.8
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.2e-33 148.3 83 88.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 8.1e-30 135.6 125 61.6
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 4.0e-29 133.3 83 78.3
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 3.4e-28 130.2 83 75.9
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 2.5e-23 114.0 57 86.0
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.4e-21 108.2 76 75.0
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.7e-19 101.3 69 75.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.7e-16 91.3 273 29.7
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 5.1e-16 89.7 47 91.5
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 7.1e-10 69.3 40 75.0
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 7.3e-07 59.3 66 53.0
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 3.6e-06 57.0 157 28.0


User provided reference genes

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