Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1336.6 666 100.0
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1240.7 668 91.5
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1239.6 668 91.3
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1239.2 668 90.9
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1236.1 668 91.0
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1235.7 668 91.5
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1234.9 668 91.5
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 668 90.9
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1229.5 668 90.6
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1229.2 668 90.7
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1228.0 668 91.0
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1228.0 668 90.7
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1227.6 669 90.9
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1227.2 668 90.6
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 666 91.0
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 668 90.7
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 668 90.6
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1224.5 674 90.1
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1221.8 668 90.0
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1221.1 668 90.9
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1219.9 668 89.1
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1219.1 668 90.6
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1217.6 668 90.3
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1217.2 667 90.6
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1217.2 667 90.6
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1216.4 668 88.9
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1216.4 668 88.8
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1215.7 669 89.7
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1215.3 668 89.5
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1214.5 668 89.7
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1214.1 668 90.0
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1213.7 668 90.0
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1213.4 668 89.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1213.4 668 89.7
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1213.0 669 89.5
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1211.4 668 89.1
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1211.1 668 88.8
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1210.7 695 86.6
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1209.5 668 88.9
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1208.7 668 89.2
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1208.4 669 88.9
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1208.0 668 89.4
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1206.8 668 88.9
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1206.4 668 88.8
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1206.4 669 89.2
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1206.4 672 89.1
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1206.0 668 88.5
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1206.0 668 89.5
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1206.0 668 89.5
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1205.7 669 88.5
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1205.3 668 88.6
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1204.9 668 88.5
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1203.7 669 88.3
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1202.6 668 88.6
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1201.0 668 88.0
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1200.7 669 88.2
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1199.9 668 88.5
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1198.0 668 88.9
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1198.0 669 88.2
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1197.6 668 88.0
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1196.8 668 88.2
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1196.4 668 88.0
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1196.0 668 88.0
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1195.6 668 88.5
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1194.9 668 87.7
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1194.5 668 88.8
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1194.5 668 88.9
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1193.7 668 87.1
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1193.3 668 88.3
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1193.3 669 87.4
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1192.9 668 87.7
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1192.9 668 87.9
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1192.6 668 88.3
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1191.8 668 87.7
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1191.8 668 88.0
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1191.4 668 88.2
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1191.4 668 87.9
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1191.0 668 87.9
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1190.3 668 87.1
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1190.3 668 88.2
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1189.5 668 87.6
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1188.7 669 88.3
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1188.7 668 86.8
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1187.9 669 88.0
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1187.6 668 88.3
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1186.8 668 87.3
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1186.4 668 86.7
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1186.4 668 87.4
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1186.0 668 87.1
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1186.0 668 88.0
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1185.6 668 86.8
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1184.9 731 81.3
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1184.9 668 87.0
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1184.1 668 87.0
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1183.7 668 87.0
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1183.3 668 87.1
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1182.9 668 86.8
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1181.8 668 87.3
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1181.4 668 87.1
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1181.0 639 91.2
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1179.9 668 86.4
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1179.1 668 87.3
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1176.4 668 86.4
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1175.2 669 87.1
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1174.1 668 87.1
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1168.7 642 89.6
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1162.1 749 79.0
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1161.0 684 84.9
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1160.2 669 85.8
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1157.5 704 82.2
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1150.2 668 84.1
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1148.7 669 85.2
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1148.3 639 88.6
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1141.7 639 88.3
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1138.6 666 83.6
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1132.9 674 85.2
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1126.3 669 84.8
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1104.4 613 88.3
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1098.2 630 85.6
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1090.1 605 88.4
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 2.3e-311 1071.6 669 78.8
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 5.5e-311 1070.5 668 78.9
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 6.8e-311 1070.1 675 80.3
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.9e-308 1062.0 668 78.3
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.6e-305 1051.6 668 76.9
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.8e-296 1021.5 668 75.1
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.1e-279 966.5 606 78.4
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 4.8e-235 818.1 664 62.0
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.1e-223 780.4 538 76.6
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.9e-223 779.6 668 60.0
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.4e-210 736.9 644 60.7
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.1e-206 723.0 518 72.8
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 1.9e-199 699.9 453 79.0
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.7e-195 686.8 397 88.7
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.1e-178 629.0 666 54.7
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.1e-178 629.0 666 54.7
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 4.9e-131 472.6 426 60.3
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 2.4e-130 470.3 263 87.5
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 6.7e-80 302.8 576 36.8
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.9e-75 287.3 151 91.4
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.9e-72 276.9 150 90.0
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 7.0e-69 266.2 143 90.9
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.1e-57 228.0 170 71.8
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 7.5e-39 166.4 273 38.8
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.9e-37 161.8 84 92.9
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.1e-37 160.6 98 79.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 6.0e-36 156.8 80 92.5
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 1.1e-26 125.9 72 80.6
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 5.6e-26 123.6 71 83.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.6e-25 120.9 80 71.2
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 2.9e-22 111.3 69 73.9
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 6.0e-20 103.6 108 53.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 3.9e-19 100.9 73 71.2
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 6.6e-19 100.1 221 34.8
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.5e-18 99.0 67 71.6
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 5.6e-18 97.1 75 66.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.7e-17 94.0 75 64.0
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 6.2e-17 93.6 85 55.3
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 2.2e-14 85.1 85 50.6
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 8.4e-14 83.2 69 66.7
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 1.1e-13 82.8 47 83.0
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 2.7e-12 78.2 61 62.3
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 3.9e-11 74.3 42 83.3
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.9e-10 72.0 43 74.4
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 4.7e-09 67.4 33 97.0
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.4e-08 65.9 47 63.8
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.3e-08 63.9 46 63.0
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.9e-08 63.5 45 64.4
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 4.4e-07 60.8 142 29.6


User provided reference genes

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