Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03402 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 6.8e-40 166.8 79 100.0
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.5e-18 95.1 51 86.3
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 2.5e-18 95.1 51 86.3
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 2.5e-18 95.1 51 86.3
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 3.3e-18 94.7 51 84.3
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 3.3e-18 94.7 51 86.3
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 4.3e-18 94.4 51 86.3
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 4.3e-18 94.4 51 84.3
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 7.3e-18 93.6 51 86.3
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 7.3e-18 93.6 51 84.3
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 7.3e-18 93.6 51 86.3
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 9.6e-18 93.2 51 82.4
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 9.6e-18 93.2 51 82.4
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 9.6e-18 93.2 51 82.4
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 9.6e-18 93.2 51 82.4
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 1.3e-17 92.8 51 84.3
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 1.6e-17 92.4 51 84.3
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 2.1e-17 92.0 51 82.4
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.1e-17 92.0 51 82.4
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 2.1e-17 92.0 51 82.4
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 2.1e-17 92.0 51 82.4
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 2.1e-17 92.0 51 80.4
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 2.1e-17 92.0 51 80.4
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 2.1e-17 92.0 51 80.4
Dinv43572 Davidia involucrata HOM05D002708 ORTHO05D003516 2.8e-17 91.7 51 80.4
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 2.8e-17 91.7 51 82.4
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 2.8e-17 91.7 51 80.4
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 80.4
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 80.4
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 80.4
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 80.4
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 80.4
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 80.4
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 80.4
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 3.6e-17 91.3 51 78.4
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 4.8e-17 90.9 51 80.4
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 4.8e-17 90.9 51 78.4
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 4.8e-17 90.9 51 80.4
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 4.8e-17 90.9 51 82.4
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 6.2e-17 90.5 51 80.4
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 6.2e-17 90.5 51 84.3
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 6.2e-17 90.5 51 82.4
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 6.2e-17 90.5 51 80.4
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 78.4
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 78.4
MELO3C023701.2 Cucumis melo HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 78.4
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 78.4
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 80.4
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 80.4
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 80.4
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 80.4
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 80.4
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 78.4
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 80.4
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 8.1e-17 90.1 51 80.4
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 1.1e-16 89.7 51 78.4
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 1.1e-16 89.7 51 78.4
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 1.1e-16 89.7 51 78.4
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.1e-16 89.7 51 76.5
ECA248G0455 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-16 89.7 50 80.0
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 1.1e-16 89.7 51 78.4
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 1.4e-16 89.4 51 76.5
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 1.4e-16 89.4 51 78.4
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.8e-16 89.0 51 80.4
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 1.8e-16 89.0 51 78.4
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 1.8e-16 89.0 51 74.5
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 1.8e-16 89.0 51 76.5
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 2.4e-16 88.6 51 76.5
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 2.4e-16 88.6 51 76.5
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 3.1e-16 88.2 51 78.4
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.1e-16 88.2 51 80.4
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 3.1e-16 88.2 51 74.5
CANSAT54G0171 Cannabis sativa HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 76.5
CANSAT56G3223 Cannabis sativa HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 76.5
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 78.4
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 72.5
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 72.5
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 78.4
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 78.4
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 72.5
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 72.5
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 82.4
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 72.5
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 4.0e-16 87.8 51 74.5
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 5.3e-16 87.4 51 72.5
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 6.9e-16 87.0 51 72.5
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 9.0e-16 86.7 51 74.5
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 9.0e-16 86.7 51 74.5
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 1.2e-15 86.3 51 74.5
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 1.5e-15 85.9 51 72.5
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 2.0e-15 85.5 51 70.6
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 2.0e-15 85.5 51 78.4
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 2.0e-15 85.5 49 73.5
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 2.0e-15 85.5 51 72.5
TAR375G0149 Trochodendron aralioides HOM05D002708 ORTHO05D003516 2.0e-15 85.5 51 80.4
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 4.5e-15 84.3 51 82.4
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 5.8e-15 84.0 51 70.6
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 7.6e-15 83.6 51 74.5
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 7.6e-15 83.6 50 76.0
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 7.6e-15 83.6 51 74.5
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 7.6e-15 83.6 51 72.5
arahy.Tifrunner.gnm1.ann1.CBM3F9 Arachis hypogaea HOM05D002708 ORTHO05D003516 9.9e-15 83.2 50 74.0
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 9.9e-15 83.2 51 80.4
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 1.3e-14 82.8 51 80.4
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.3e-14 82.8 51 72.5
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.3e-14 82.8 51 72.5
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.3e-14 82.8 51 72.5
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.7e-14 82.4 51 78.4
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.7e-14 82.4 51 78.4
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.7e-14 82.4 51 70.6
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 2.2e-14 82.0 50 80.0
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.9e-14 81.6 51 72.5
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.9e-14 81.6 51 72.5
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 2.9e-14 81.6 51 66.7
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 2.9e-14 81.6 51 68.6
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 3.8e-14 81.3 51 72.5
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 3.8e-14 81.3 51 76.5
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 3.8e-14 81.3 51 76.5
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 3.8e-14 81.3 51 76.5
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 3.8e-14 81.3 51 76.5
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 4.9e-14 80.9 50 78.0
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 4.9e-14 80.9 51 72.5
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 8.4e-14 80.1 51 72.5
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 1.4e-13 79.3 51 74.5
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.9e-13 79.0 51 74.5
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 1.9e-13 79.0 51 74.5
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 2.4e-13 78.6 51 68.6
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 3.2e-13 78.2 51 64.7
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 66.7
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 66.7
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 66.7
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 66.7
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 68.6
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 68.6
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 66.7
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 66.7
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 66.7
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 5.4e-13 77.4 51 72.5
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 7.1e-13 77.0 51 68.6
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 7.1e-13 77.0 51 68.6
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 7.1e-13 77.0 51 68.6
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 7.1e-13 77.0 51 72.5
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 9.3e-13 76.6 51 68.6
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 9.3e-13 76.6 51 68.6
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 9.3e-13 76.6 41 80.5
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 1.2e-12 76.3 51 66.7
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 1.2e-12 76.3 51 66.7
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 1.2e-12 76.3 51 66.7
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 1.2e-12 76.3 51 66.7
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 1.2e-12 76.3 51 66.7
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.6e-12 75.9 51 68.6
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 1.6e-12 75.9 51 68.6
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 2.1e-12 75.5 51 64.7
Lsat_1_v5_gn_8_82921 Lactuca sativa HOM05D002708 ORTHO05D003516 2.1e-12 75.5 51 64.7
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 3.5e-12 74.7 51 64.7
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 4.6e-12 74.3 51 62.7
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 6.0e-12 73.9 51 64.7
Haze_24936 Corylus avellana HOM05D002708 ORTHO05D003516 6.0e-12 73.9 51 66.7
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 1.0e-11 73.2 51 68.6
QL02p018221 Quercus lobata HOM05D002708 ORTHO05D003516 1.8e-11 72.4 51 68.6
Aqoxy7G03406 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 3.0e-11 71.6 49 71.4
Aa31LG2G18580 Aethionema arabicum HOM05D002708 ORTHO05D003516 3.3e-10 68.2 51 60.8
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 3.7e-09 64.7 38 78.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 4.8e-09 64.3 33 81.8
QL02p088243 Quercus lobata HOM05D002708 ORTHO05D003516 1.4e-08 62.8 51 52.9
QL02p087594 Quercus lobata HOM05D002708 ORTHO05D003516 1.2e-07 59.7 51 52.9
Lj1g0008805 Lotus japonicus HOM05D002708 ORTHO05D003516 9.9e-07 56.6 26 88.5
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 1.7e-06 55.8 51 43.1
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 2.2e-06 55.5 51 43.1
Aqoxy7G03157 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.4e-06 53.5 51 45.1


User provided reference genes

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