Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 4.0e-111 404.8 211 100.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 2.4e-79 299.3 211 71.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 2.9e-77 292.4 215 72.6
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.4e-71 273.5 211 67.8
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.8e-71 273.1 211 66.8
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 3.1e-71 272.3 219 65.8
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.5e-70 270.0 211 65.9
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.7e-69 266.5 219 65.3
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.2e-69 266.2 215 67.4
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 2.9e-69 265.8 203 71.9
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 8.4e-69 264.2 219 65.3
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 8.4e-69 264.2 218 63.8
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.4e-68 263.5 211 63.5
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 4.2e-68 261.9 178 74.7
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 5.4e-68 261.5 215 66.5
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 5.4e-68 261.5 211 64.5
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 5.4e-68 261.5 218 64.7
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 7.1e-68 261.2 219 63.0
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 7.1e-68 261.2 208 66.3
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 9.3e-68 260.8 220 62.7
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.2e-67 260.4 218 63.8
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 1.2e-67 260.4 219 61.6
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 4.6e-67 258.5 214 63.6
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 6.0e-67 258.1 184 72.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.3e-66 256.9 219 62.1
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 3.0e-66 255.8 212 63.2
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 3.9e-66 255.4 219 62.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.1e-65 253.8 211 62.1
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.9e-65 253.1 219 63.5
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 3.3e-65 252.3 219 60.7
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 4.3e-65 251.9 219 62.6
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 5.6e-65 251.5 196 67.9
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.3e-64 250.4 223 61.0
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 2.1e-64 249.6 223 60.1
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 2.1e-64 249.6 220 61.4
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.8e-64 249.2 217 61.3
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 3.6e-64 248.8 219 61.2
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 8.1e-64 247.7 219 61.2
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 8.1e-64 247.7 235 58.3
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.1e-63 247.3 213 62.0
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.8e-63 246.5 214 61.2
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 4.0e-63 245.4 218 60.6
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 4.0e-63 245.4 223 61.0
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 4.0e-63 245.4 223 61.0
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 5.3e-63 245.0 219 59.4
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 6.9e-63 244.6 220 59.1
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 9.0e-63 244.2 219 60.7
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 9.0e-63 244.2 223 59.2
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.5e-62 243.4 223 58.7
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.6e-62 242.7 189 68.3
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.4e-62 242.3 223 60.5
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 3.4e-62 242.3 218 57.8
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.4e-62 242.3 220 58.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 3.4e-62 242.3 210 60.5
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 3.4e-62 242.3 204 64.7
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 4.5e-62 241.9 221 59.3
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.8e-62 241.5 264 52.3
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 5.8e-62 241.5 223 59.6
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 7.6e-62 241.1 191 62.8
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.3e-61 240.4 220 59.5
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.3e-61 240.4 223 59.2
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 2.9e-61 239.2 219 56.2
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 3.8e-61 238.8 227 55.9
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 4.9e-61 238.4 191 62.8
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 6.4e-61 238.0 198 61.1
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 6.4e-61 238.0 223 57.0
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 6.4e-61 238.0 225 56.4
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.9e-60 236.5 223 59.6
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 7.1e-60 234.6 211 58.8
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 7.1e-60 234.6 223 59.2
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 7.1e-60 234.6 221 58.4
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 9.3e-60 234.2 219 58.9
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 9.3e-60 234.2 193 63.7
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.2e-59 233.8 230 56.5
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.6e-59 233.4 220 58.6
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.7e-59 232.6 219 57.5
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 2.7e-59 232.6 218 57.8
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.7e-59 232.6 249 53.4
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.5e-59 232.3 219 58.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-59 232.3 220 58.2
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.6e-59 231.9 220 58.2
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 6.0e-59 231.5 168 71.4
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 6.0e-59 231.5 219 58.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 7.9e-59 231.1 218 57.3
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 7.9e-59 231.1 218 57.8
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.3e-58 230.3 218 57.3
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-58 229.2 220 57.3
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-58 229.2 220 57.3
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-58 229.2 220 57.3
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.9e-58 228.8 182 68.1
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 5.1e-58 228.4 190 63.7
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 6.7e-58 228.0 252 51.6
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 8.7e-58 227.6 268 51.1
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-57 227.3 220 56.8
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-57 227.3 220 56.8
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-57 227.3 220 56.8
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.5e-57 226.9 218 56.9
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.5e-57 226.9 225 58.2
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.9e-57 226.5 218 56.9
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.9e-57 226.5 218 56.9
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.5e-57 226.1 220 56.8
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-57 225.7 220 56.8
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 9.6e-57 224.2 213 55.9
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 9.6e-57 224.2 218 56.4
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.6e-56 223.4 218 56.9
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 2.1e-56 223.0 218 55.0
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 2.1e-56 223.0 218 56.0
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.1e-56 223.0 221 59.3
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.8e-56 222.6 218 56.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 3.7e-56 222.2 218 54.6
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 3.7e-56 222.2 218 56.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 6.2e-56 221.5 218 56.0
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 3.1e-55 219.2 226 54.9
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.5e-54 216.9 245 51.4
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 4.9e-53 211.8 232 52.6
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 7.1e-52 208.0 234 51.3
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 2.7e-51 206.1 209 56.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 3.0e-50 202.6 191 59.7
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.1e-48 196.4 186 57.0
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-46 189.9 198 55.1
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-44 184.1 164 60.4
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 5.5e-44 181.8 342 36.8
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.8e-40 169.5 189 51.9
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.6e-38 162.9 134 64.9
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 7.7e-38 161.4 133 66.2
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.7e-37 160.2 177 53.1
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 5.5e-36 155.2 97 78.4
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.5e-36 155.2 136 61.8
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.9e-35 151.4 153 55.6
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.0e-34 151.0 148 58.1
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 3.0e-34 149.4 158 55.7
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.7e-33 144.4 148 54.7
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.1e-31 141.0 213 42.7
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 4.1e-31 139.0 137 61.3
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 2.0e-30 136.7 121 60.3
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 4.5e-30 135.6 150 51.3
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 5.0e-29 132.1 119 56.3
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.1e-27 125.2 93 69.9
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 4.4e-25 119.0 183 39.3
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 6.3e-24 115.2 189 39.7
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 4.1e-23 112.5 208 37.5
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 5.3e-23 112.1 66 90.9
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 3.5e-22 109.4 93 58.1
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 5.9e-22 108.6 143 48.3
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 8.5e-21 104.8 91 59.3
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 8.0e-19 98.2 87 58.6
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.5e-17 94.0 87 56.3
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.4e-15 86.7 68 58.8
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.9e-12 77.0 142 38.7
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.7e-11 73.2 50 68.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 1.3e-08 64.3 175 33.1


User provided reference genes

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