Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 9.7e-189 663.3 331 100.0
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-131 473.8 333 70.9
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.1e-127 459.5 354 66.1
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 5.3e-126 454.9 334 70.1
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.5e-125 453.4 332 69.6
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 2.6e-125 452.6 334 69.2
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.3e-124 450.3 333 67.3
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.8e-124 448.7 335 68.7
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 8.4e-124 447.6 332 68.1
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.9e-123 446.4 334 69.2
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 2.4e-123 446.0 330 67.6
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.6e-122 443.4 333 69.7
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.1e-122 443.0 334 68.3
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-122 443.0 333 70.9
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 2.3e-121 439.5 334 68.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.9e-121 438.7 331 67.1
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 5.1e-121 438.3 334 68.0
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 6.6e-121 438.0 334 67.7
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.6e-121 438.0 331 67.1
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 8.7e-121 437.6 337 67.4
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 4.3e-120 435.3 330 66.1
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 7.4e-120 434.5 338 67.2
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 2.8e-119 432.6 334 67.1
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 6.2e-119 431.4 339 66.4
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 6.2e-119 431.4 335 66.6
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 6.2e-119 431.4 333 66.7
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.4e-118 429.5 332 66.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.4e-118 429.5 334 66.5
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 3.1e-118 429.1 335 66.3
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.0e-118 428.7 334 63.8
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 5.3e-118 428.3 333 66.1
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 9.0e-118 427.6 332 65.1
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.5e-117 426.8 331 66.2
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.0e-117 426.4 333 64.9
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.6e-117 426.0 333 64.9
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 4.5e-117 425.2 335 66.0
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 7.6e-117 424.5 332 64.8
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 7.6e-117 424.5 335 64.8
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 9.9e-117 424.1 335 66.9
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 2.2e-116 422.9 333 65.8
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.2e-116 422.9 334 65.6
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 4.9e-116 421.8 333 64.6
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 4.9e-116 421.8 336 65.5
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 6.4e-116 421.4 339 64.6
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.1e-115 420.6 330 64.8
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.1e-114 416.4 335 64.5
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.1e-114 416.4 335 63.6
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.7e-114 416.0 318 66.7
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.6e-114 415.2 339 65.2
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 4.6e-114 415.2 329 62.9
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.0e-113 414.1 340 64.4
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.0e-113 414.1 340 64.4
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.8e-113 413.3 334 65.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.3e-113 412.9 334 63.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 6.7e-113 411.4 353 62.3
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 8.7e-113 411.0 335 62.1
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.9e-112 409.8 341 65.4
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.5e-112 409.5 353 62.6
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 4.3e-112 408.7 334 62.6
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 7.4e-112 407.9 341 64.2
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 7.4e-112 407.9 328 64.6
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 9.6e-112 407.5 336 62.2
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 1.6e-111 406.8 340 65.0
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.6e-111 406.8 329 62.9
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 2.8e-111 406.0 337 60.5
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 6.2e-111 404.8 379 58.3
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 8.1e-111 404.4 327 63.6
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 8.1e-111 404.4 334 62.3
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.4e-110 403.7 334 62.0
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.8e-110 403.3 344 63.7
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 4.0e-110 402.1 335 62.7
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.4e-109 399.1 332 61.4
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 5.8e-109 398.3 331 61.0
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 7.6e-109 397.9 334 60.8
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 2.2e-108 396.4 335 61.8
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 3.8e-108 395.6 332 60.8
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.9e-108 395.2 335 61.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.9e-108 395.2 335 62.4
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 6.5e-108 394.8 335 60.6
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.1e-107 394.0 328 62.2
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.2e-107 392.5 337 61.1
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.2e-107 392.5 337 61.1
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 7.1e-107 391.3 334 61.7
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.1e-107 391.3 335 61.2
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 9.3e-107 391.0 335 61.2
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.6e-106 390.2 329 60.2
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 2.7e-106 389.4 338 60.9
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.7e-106 389.4 335 60.9
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.6e-106 388.7 335 61.2
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 6.0e-106 388.3 339 59.9
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 6.0e-106 388.3 337 60.2
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 2.3e-105 386.3 337 60.2
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 6.7e-105 384.8 342 59.4
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 6.7e-105 384.8 340 61.5
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.1e-104 384.0 329 59.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.1e-104 384.0 329 59.6
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.9e-104 383.3 337 59.9
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 3.3e-104 382.5 336 60.4
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.7e-104 381.7 343 60.1
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.6e-103 380.2 346 60.1
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.4e-102 377.1 340 60.3
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 2.4e-102 376.3 356 57.9
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 2.4e-102 376.3 356 57.9
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.3e-102 375.2 335 58.5
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.5e-101 373.6 339 60.8
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 2.5e-99 366.3 355 57.5
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.2e-98 364.0 342 57.6
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.0e-97 360.9 332 56.0
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 9.0e-94 347.8 357 55.7
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.5e-93 347.1 359 56.8
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.3e-92 344.0 264 66.3
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.6e-90 335.5 328 55.2
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 3.0e-89 332.8 283 61.5
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 4.3e-88 328.9 340 53.8
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.8e-86 323.6 322 55.0
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.8e-84 315.8 230 70.0
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 8.8e-73 278.1 331 51.1
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 7.0e-70 268.5 241 60.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.5e-67 258.8 253 54.9
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 5.7e-64 248.8 380 43.7
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 5.4e-62 242.3 354 44.4
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 7.0e-62 241.9 355 43.1
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.0e-62 241.9 355 41.1
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 2.7e-61 240.0 187 64.2
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.1e-59 234.6 212 58.5
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.5e-59 234.2 362 41.2
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.0e-57 228.0 267 54.3
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 3.1e-54 216.5 224 56.2
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 8.6e-52 208.4 190 58.4
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 4.7e-50 202.6 361 41.6
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.8e-49 200.7 217 51.2
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 6.6e-44 182.2 175 51.4
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 9.5e-43 178.3 368 36.7
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 5.6e-35 152.5 375 34.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 9.5e-35 151.8 353 36.5
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.4e-30 136.0 106 64.2
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 9.5e-27 125.2 147 46.3
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 6.8e-25 119.0 353 32.6
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 9.9e-24 115.2 112 50.9
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 8.4e-23 112.1 103 59.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.4e-22 110.5 106 52.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-22 110.2 85 63.5
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 4.1e-22 109.8 125 46.4
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 5.4e-22 109.4 86 59.3
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.1e-21 107.5 86 58.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.0e-17 93.2 80 63.8
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 2.6e-16 90.5 55 78.2
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.9e-15 87.0 150 34.7
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 4.9e-15 86.3 71 59.2
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 6.4e-15 85.9 335 24.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.4e-14 84.7 61 67.2
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 7.8e-13 79.0 41 82.9
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.6e-10 70.1 95 40.0
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 9.0e-09 65.5 170 27.6
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 9.0e-09 65.5 53 54.7
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 9.3e-06 55.5 43 60.5


User provided reference genes

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