Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 2.2e-230 802.0 414 100.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 9.3e-197 690.3 412 84.5
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.7e-196 688.7 414 83.3
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 82.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 83.6
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.3e-194 681.4 414 83.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.6e-193 679.5 412 82.5
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.8e-192 676.0 414 83.1
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.8e-192 676.0 414 80.7
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 81.4
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 82.4
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.0e-191 672.5 413 81.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.0e-190 670.2 409 82.6
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.2e-190 669.1 416 81.5
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.2e-190 669.1 413 80.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 2.9e-190 668.7 414 80.4
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.9e-190 667.9 445 76.6
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 6.5e-190 667.5 414 81.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.9e-189 666.0 414 81.6
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.5e-189 665.6 413 79.9
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.2e-189 664.8 410 81.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.2e-189 664.8 414 79.5
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 80.9
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.1e-188 662.5 413 79.4
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 3.5e-188 661.8 414 80.4
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 4.6e-188 661.4 414 80.9
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 80.0
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 80.0
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.0e-187 660.2 414 79.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-187 659.4 414 80.7
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 79.7
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 3.0e-187 658.7 409 80.9
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-186 656.8 414 78.7
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 79.9
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.9e-186 656.0 414 79.2
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.6e-185 652.9 414 79.5
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 2.1e-185 652.5 414 80.4
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.8e-185 651.4 411 80.5
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 6.3e-185 651.0 415 81.0
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 6.3e-185 651.0 415 80.7
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 8.2e-185 650.6 413 78.5
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 4.1e-184 648.3 411 80.3
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.3e-184 647.9 414 77.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 5.3e-184 647.9 414 79.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 77.1
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.2e-183 646.7 414 78.3
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 2.0e-183 646.0 415 79.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.6e-183 645.6 414 77.1
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.4e-183 645.2 413 78.0
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 4.5e-183 644.8 414 79.0
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.8e-183 644.4 414 77.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 7.6e-183 644.0 413 78.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.2e-182 642.5 413 77.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 5.0e-182 641.3 414 78.5
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 6.5e-182 641.0 414 77.5
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-181 640.2 414 77.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.1e-181 640.2 411 77.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.1e-181 640.2 409 77.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-181 639.0 414 78.0
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 3.2e-181 638.6 414 77.8
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 4.2e-181 638.3 413 77.2
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 7.2e-181 637.5 414 77.8
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 7.2e-181 637.5 413 78.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-180 636.7 414 77.3
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.2e-180 636.7 414 77.3
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.2e-180 636.7 411 77.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.2e-180 636.7 420 76.9
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.6e-180 636.3 415 76.9
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 2.7e-180 635.6 420 76.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.5e-180 635.2 414 77.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.5e-180 635.2 414 77.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 6.1e-180 634.4 414 77.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.0e-179 633.6 416 78.1
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.3e-179 633.3 414 77.1
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 2.3e-179 632.5 414 76.8
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 2.5e-178 629.0 414 76.3
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 5.7e-178 627.9 410 77.3
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.3e-177 624.4 411 76.4
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.1e-176 623.6 414 76.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.4e-176 622.5 426 74.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 2.4e-176 622.5 426 75.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 2.4e-176 622.5 426 75.1
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 3.1e-176 622.1 413 72.9
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 3.1e-176 622.1 429 73.4
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.2e-175 620.2 438 73.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.2e-175 620.2 415 76.1
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.5e-175 619.8 414 77.1
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.9e-174 615.5 414 76.1
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 5.9e-167 591.3 371 81.1
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.8e-166 588.6 375 79.7
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.1e-164 582.8 410 70.7
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-163 580.1 416 71.6
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.4e-160 570.1 410 72.0
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.4e-160 569.3 406 72.7
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.2e-159 567.0 410 68.5
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.0e-155 552.4 412 70.1
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 3.0e-155 552.4 414 68.8
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.8e-153 545.8 371 75.5
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.1e-152 543.9 323 84.5
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 3.2e-149 532.3 398 65.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.4e-147 526.9 485 60.6
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 3.0e-147 525.8 418 65.8
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.3e-145 520.4 411 67.2
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.2e-145 519.6 412 63.3
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.1e-144 515.4 405 62.2
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.0e-131 472.2 281 83.3
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.0e-131 472.2 281 83.3
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 5.7e-130 468.4 305 75.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.3e-129 467.2 296 78.0
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 8.0e-124 448.0 257 86.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 2.3e-118 429.9 256 81.6
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.6e-116 423.7 285 73.7
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.7e-116 422.2 314 69.7
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 3.6e-100 369.4 313 62.3
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 5.4e-96 355.5 292 67.1
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 3.9e-94 349.4 343 51.0
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-93 347.4 284 63.0
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.4e-83 314.3 191 83.8
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.6e-77 292.4 238 63.9
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.6e-76 290.8 205 71.2
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.6e-71 274.2 173 79.2
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.0e-71 272.3 199 69.3
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.9e-70 269.6 184 71.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.9e-63 245.4 204 64.2
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 8.7e-62 241.9 401 35.4
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.5e-58 229.6 131 88.5
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.3e-57 228.0 406 34.5
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.0e-54 216.9 317 36.9
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.8e-52 210.3 233 51.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.5e-49 198.7 126 78.6
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.1e-47 192.6 199 56.3
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-46 190.7 121 74.4
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.0e-38 165.2 161 57.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-38 164.9 102 78.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-38 164.5 177 52.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 3.3e-37 160.2 414 31.4
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.7e-36 156.8 107 69.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.5e-34 149.8 114 64.9
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 7.2e-32 142.5 83 83.1
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.4e-30 138.3 76 84.2
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-25 121.7 115 60.0
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-18 98.6 51 92.2
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.3e-17 94.4 99 55.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 4.3e-16 90.1 160 39.4
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.6e-15 88.2 114 50.0
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.3e-14 84.3 177 37.3
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.4e-13 80.1 59 76.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.7e-12 77.0 54 70.4
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 4.9e-12 76.6 146 39.7
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.0e-10 71.2 121 38.8
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.9e-09 67.0 71 52.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 3.9e-09 67.0 40 82.5
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.5e-08 65.1 118 37.3
Cfa025229 Carpinus fangiana HOM05D004528 ORTHO05D005815 4.0e-06 57.0 222 26.1


User provided reference genes

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