Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02098 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 7.6e-88 327.0 153 100.0
Aqoxy5G01107_Aqoxy5G01108 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 4.4e-27 125.2 89 66.3
CSS0046762 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 6.4e-18 94.7 88 58.0
Nn1g07877 Nelumbo nucifera HOM05D002628 ORTHO05D002785 3.2e-17 92.4 91 52.7
Actinidia09479 Actinidia chinensis HOM05D002628 ORTHO05D002785 5.4e-17 91.7 86 57.0
CSS0048005 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 9.2e-17 90.9 88 55.7
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 9.2e-17 90.9 88 55.7
Actinidia23721 Actinidia chinensis HOM05D002628 ORTHO05D002785 3.5e-16 89.0 78 57.7
Dinv19196 Davidia involucrata HOM05D002628 ORTHO05D002785 4.6e-16 88.6 88 54.5
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 4.6e-16 88.6 87 54.0
TAR362G0009 Trochodendron aralioides HOM05D002628 ORTHO05D002785 4.6e-16 88.6 91 53.8
Actinidia37601 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.3e-15 87.0 88 51.1
Duzib133G0258 Durio zibethinus HOM05D002628 ORTHO05D002785 1.7e-15 86.7 88 52.3
Cpa.g.sc8.144 Carica papaya HOM05D002628 ORTHO05D002785 3.0e-15 85.9 77 57.1
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 5.1e-15 85.1 79 54.4
Lj2C1130G3 Lonicera japonica HOM05D002628 ORTHO05D002785 6.6e-15 84.7 88 53.4
GSVIVG01028685001 Vitis vinifera HOM05D002628 ORTHO05D002785 6.6e-15 84.7 77 55.8
Nitab4.5_0003758g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 8.6e-15 84.3 78 56.4
PSO675G2169 Papaver somniferum HOM05D002628 ORTHO05D002785 8.6e-15 84.3 77 55.8
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 1.1e-14 84.0 81 55.6
Eucgr.K02162 Eucalyptus grandis HOM05D002628 ORTHO05D002785 1.1e-14 84.0 88 47.7
Lj1A87T37 Lonicera japonica HOM05D002628 ORTHO05D002785 1.5e-14 83.6 88 52.3
Actinidia39765 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.9e-14 83.2 86 50.0
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 1.9e-14 83.2 79 51.9
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 1.9e-14 83.2 79 53.2
Manes.13G047100 Manihot esculenta HOM05D002628 ORTHO05D002785 1.9e-14 83.2 79 53.2
Rhsim01G0255500 Rhododendron simsii HOM05D002628 ORTHO05D002785 1.9e-14 83.2 79 53.2
TAR633G2086 Trochodendron aralioides HOM05D002628 ORTHO05D002785 1.9e-14 83.2 88 51.1
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 2.5e-14 82.8 79 54.4
Nitab4.5_0000045g0240 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.5e-14 82.8 78 55.1
Peaxi162Scf00517g00636 Petunia axillaris HOM05D002628 ORTHO05D002785 2.5e-14 82.8 96 47.9
vmacro14750 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 2.5e-14 82.8 79 54.4
ClCG09G008950 Citrullus lanatus HOM05D002628 ORTHO05D002785 3.3e-14 82.4 76 55.3
Gohir.A08G194900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.3e-14 82.4 87 51.7
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.3e-14 82.4 99 45.5
Gohir.D11G144700 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.3e-14 82.4 99 45.5
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 4.3e-14 82.0 75 57.3
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 5.6e-14 81.6 99 45.5
TWI75G1871 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 5.6e-14 81.6 80 51.2
AUR62008919 Chenopodium quinoa HOM05D002628 ORTHO05D002785 7.3e-14 81.3 79 55.7
Sed0004451 Sechium edule HOM05D002628 ORTHO05D002785 7.3e-14 81.3 76 53.9
Ah.15g094000 Amaranthus hybridus HOM05D002628 ORTHO05D002785 9.5e-14 80.9 79 54.4
CAN.G771.81 Capsicum annuum HOM05D002628 ORTHO05D002785 9.5e-14 80.9 76 56.6
HanXRQChr04g0108091 Helianthus annuus HOM05D002628 ORTHO05D002785 9.5e-14 80.9 88 52.3
Duzib138G1695 Durio zibethinus HOM05D002628 ORTHO05D002785 1.2e-13 80.5 89 46.1
RcHm_v2.0_Chr6g0284671 Rosa chinensis HOM05D002628 ORTHO05D002785 1.2e-13 80.5 79 51.9
TWI18G0012 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 1.2e-13 80.5 80 51.2
Aqoxy6G02008 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 1.6e-13 80.1 76 55.3
CsaV3_7G026060 Cucumis sativus L. HOM05D002628 ORTHO05D002785 2.1e-13 79.7 76 53.9
Gorai.001G187100 Gossypium raimondii HOM05D002628 ORTHO05D002785 2.1e-13 79.7 92 46.7
MBI18_g12534_MAGBIO Magnolia biondii HOM05D002628 ORTHO05D002785 2.1e-13 79.7 88 47.7
Solyc09g060080.4 Solanum lycopersicum HOM05D002628 ORTHO05D002785 2.1e-13 79.7 78 53.8
Sopen09g023690 Solanum pennellii HOM05D002628 ORTHO05D002785 2.1e-13 79.7 78 53.8
MELO3C021029.2 Cucumis melo HOM05D002628 ORTHO05D002785 2.8e-13 79.3 76 53.9
Gohir.A07G157100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.8e-13 79.3 92 44.6
Sc05g0002110 Simmondsia chinensis HOM05D002628 ORTHO05D002785 2.8e-13 79.3 79 49.4
Solyc06g083420.3 Solanum lycopersicum HOM05D002628 ORTHO05D002785 2.8e-13 79.3 78 53.8
Sopen06g034780 Solanum pennellii HOM05D002628 ORTHO05D002785 2.8e-13 79.3 78 53.8
FvH4_2g18860 Fragaria vesca HOM05D002628 ORTHO05D002785 3.6e-13 79.0 79 50.6
FAN24G2878 Fragaria x ananassa HOM05D002628 ORTHO05D002785 3.6e-13 79.0 79 50.6
FAN27G0734 Fragaria x ananassa HOM05D002628 ORTHO05D002785 3.6e-13 79.0 79 50.6
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 3.6e-13 79.0 71 54.9
Sed0013250 Sechium edule HOM05D002628 ORTHO05D002785 3.6e-13 79.0 76 52.6
AL3G40640 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 4.7e-13 78.6 87 48.3
AT3G24880 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 4.7e-13 78.6 87 48.3
Carub.0003s2526 Capsella rubella HOM05D002628 ORTHO05D002785 4.7e-13 78.6 87 48.3
vmacro02763 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 4.7e-13 78.6 79 50.6
Gohir.D07G163200 Gossypium hirsutum HOM05D002628 ORTHO05D002785 6.2e-13 78.2 92 45.7
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 6.2e-13 78.2 79 49.4
Oeu004073.1 Olea europaea HOM05D002628 ORTHO05D002785 8.1e-13 77.8 75 54.7
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 8.1e-13 77.8 88 48.9
Actinidia39759 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.1e-12 77.4 91 47.3
CiPaw.03G148700 Carya illinoinensis HOM05D002628 ORTHO05D002785 1.1e-12 77.4 76 55.3
MD10G1163500 Malus domestica HOM05D002628 ORTHO05D002785 1.1e-12 77.4 82 48.8
Nitab4.5_0001564g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 1.1e-12 77.4 88 46.6
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.1e-12 77.4 75 53.3
THA.LOC104821651 Tarenaya hassleriana HOM05D002628 ORTHO05D002785 1.1e-12 77.4 78 50.0
AT3G24870 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 1.4e-12 77.0 87 47.1
BcaB06g26704 Brassica carinata HOM05D002628 ORTHO05D002785 1.4e-12 77.0 80 48.8
Cc01_g16950 Coffea canephora HOM05D002628 ORTHO05D002785 1.4e-12 77.0 87 46.0
Thhalv10002368m.g Eutrema salsugineum HOM05D002628 ORTHO05D002785 1.4e-12 77.0 78 48.7
FAN15G1468 Fragaria x ananassa HOM05D002628 ORTHO05D002785 1.4e-12 77.0 88 45.5
Gohir.A07G201100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.4e-12 77.0 108 39.8
Lj1g0019543 Lotus japonicus HOM05D002628 ORTHO05D002785 1.4e-12 77.0 77 53.2
QL09p053994 Quercus lobata HOM05D002628 ORTHO05D002785 1.4e-12 77.0 77 54.5
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.4e-12 77.0 75 53.3
Gorai.001G233800 Gossypium raimondii HOM05D002628 ORTHO05D002785 1.8e-12 76.6 111 39.6
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 1.8e-12 76.6 79 50.6
Aa31LG8G11310 Aethionema arabicum HOM05D002628 ORTHO05D002785 2.3e-12 76.3 88 43.2
Carub.0003s2528 Capsella rubella HOM05D002628 ORTHO05D002785 2.3e-12 76.3 87 47.1
Gohir.D07G207400 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.3e-12 76.3 111 38.7
MD05G1174400 Malus domestica HOM05D002628 ORTHO05D002785 3.1e-12 75.9 76 52.6
Hund18389 Selenicereus undatus HOM05D002628 ORTHO05D002785 3.1e-12 75.9 79 50.6
BcaC06g35765 Brassica carinata HOM05D002628 ORTHO05D002785 4.0e-12 75.5 78 48.7
A07p07330 Brassica napus HOM05D002628 ORTHO05D002785 4.0e-12 75.5 78 48.7
C07p11110 Brassica napus HOM05D002628 ORTHO05D002785 4.0e-12 75.5 78 48.7
BraA07t28522Z Brassica rapa HOM05D002628 ORTHO05D002785 4.0e-12 75.5 78 48.7
ECA236G2127 Erigeron canadensis HOM05D002628 ORTHO05D002785 4.0e-12 75.5 88 48.9
Migut.D02520 Erythranthe guttata HOM05D002628 ORTHO05D002785 4.0e-12 75.5 75 53.3
CAN.G15.8 Capsicum annuum HOM05D002628 ORTHO05D002785 5.2e-12 75.1 78 51.3
CARHR101290 Cardamine hirsuta HOM05D002628 ORTHO05D002785 5.2e-12 75.1 87 46.0
Gohir.D08G212600 Gossypium hirsutum HOM05D002628 ORTHO05D002785 5.2e-12 75.1 79 51.9
Gorai.004G226000 Gossypium raimondii HOM05D002628 ORTHO05D002785 5.2e-12 75.1 79 51.9
Lalb_Chr03g0041701 Lupinus albus HOM05D002628 ORTHO05D002785 5.2e-12 75.1 67 55.2
Ca_26871_v3 Cicer arietinum L. HOM05D002628 ORTHO05D002785 6.8e-12 74.7 77 51.9
Sp3g22600 Schrenkiella parvula HOM05D002628 ORTHO05D002785 6.8e-12 74.7 76 51.3
SpUn0027_0080 Schrenkiella parvula HOM05D002628 ORTHO05D002785 6.8e-12 74.7 76 51.3
SGA_v2.0_scaffold3G01640 Striga asiatica HOM05D002628 ORTHO05D002785 6.8e-12 74.7 87 50.6
A04p08930 Brassica napus HOM05D002628 ORTHO05D002785 8.9e-12 74.3 84 41.7
BraA04t16589Z Brassica rapa HOM05D002628 ORTHO05D002785 8.9e-12 74.3 84 41.7
Hund05562 Selenicereus undatus HOM05D002628 ORTHO05D002785 8.9e-12 74.3 86 48.8
Zm00001eb345290 Zea mays HOM05D002628 ORTHO05D002785 8.9e-12 74.3 110 36.4
BolC7t41583H Brassica oleracea HOM05D002628 ORTHO05D002785 1.2e-11 73.9 78 47.4
Potri.002G243400 Populus trichocarpa HOM05D002628 ORTHO05D002785 1.2e-11 73.9 88 45.5
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 1.2e-11 73.9 88 45.5
BcaB03g16110 Brassica carinata HOM05D002628 ORTHO05D002785 1.5e-11 73.6 78 47.4
BcaC02g09445 Brassica carinata HOM05D002628 ORTHO05D002785 1.5e-11 73.6 78 44.9
C03p54320 Brassica napus HOM05D002628 ORTHO05D002785 1.5e-11 73.6 86 47.7
Nitab4.5_0002223g0030 Nicotiana tabacum HOM05D002628 ORTHO05D002785 1.5e-11 73.6 88 46.6
A03p43970 Brassica napus HOM05D002628 ORTHO05D002785 2.0e-11 73.2 86 47.7
BraA03t13528Z Brassica rapa HOM05D002628 ORTHO05D002785 2.0e-11 73.2 86 47.7
TPR.G31107 Trifolium pratense HOM05D002628 ORTHO05D002785 2.0e-11 73.2 77 49.4
Glyma.16G093800 Glycine max HOM05D002628 ORTHO05D002785 2.6e-11 72.8 77 51.9
BcaC01g03251 Brassica carinata HOM05D002628 ORTHO05D002785 3.4e-11 72.4 86 46.5
BolC3t17718H Brassica oleracea HOM05D002628 ORTHO05D002785 3.4e-11 72.4 86 46.5
DCAR_012652 Daucus carota HOM05D002628 ORTHO05D002785 3.4e-11 72.4 81 46.9
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 3.4e-11 72.4 77 49.4
Lsat_1_v5_gn_8_89820 Lactuca sativa HOM05D002628 ORTHO05D002785 3.4e-11 72.4 78 51.3
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 4.4e-11 72.0 80 52.5
C04p42820 Brassica napus HOM05D002628 ORTHO05D002785 4.4e-11 72.0 78 43.6
BolC4t25848H Brassica oleracea HOM05D002628 ORTHO05D002785 4.4e-11 72.0 78 43.6
Cfa002577 Carpinus fangiana HOM05D002628 ORTHO05D002785 4.4e-11 72.0 77 51.9
Psat3g145600 Pisum sativum HOM05D002628 ORTHO05D002785 4.4e-11 72.0 77 49.4
Aa31LG9G4800 Aethionema arabicum HOM05D002628 ORTHO05D002785 5.8e-11 71.6 69 53.6
DCAR_018575 Daucus carota HOM05D002628 ORTHO05D002785 5.8e-11 71.6 83 48.2
Lalb_Chr01g0022291 Lupinus albus HOM05D002628 ORTHO05D002785 5.8e-11 71.6 76 50.0
Phvul.010G018800 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 5.8e-11 71.6 77 50.6
SGA_v2.0_scaffold6G03236 Striga asiatica HOM05D002628 ORTHO05D002785 5.8e-11 71.6 87 47.1
AUR62001094 Chenopodium quinoa HOM05D002628 ORTHO05D002785 7.6e-11 71.2 77 53.2
VMungo1383G1872 Vigna mungo HOM05D002628 ORTHO05D002785 7.6e-11 71.2 77 51.9
BcaB08g34428 Brassica carinata HOM05D002628 ORTHO05D002785 9.9e-11 70.9 75 49.3
PGR083G0125 Punica granatum HOM05D002628 ORTHO05D002785 9.9e-11 70.9 76 47.4
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 1.3e-10 70.5 88 44.3
CiPaw.04G105000 Carya illinoinensis HOM05D002628 ORTHO05D002785 1.3e-10 70.5 77 50.6
Medtr7g056603 Medicago truncatula HOM05D002628 ORTHO05D002785 1.3e-10 70.5 76 50.0
HanXRQChr14g0445581 Helianthus annuus HOM05D002628 ORTHO05D002785 1.7e-10 70.1 89 41.6
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.7e-10 70.1 79 51.9
Glyma.08G352600 Glycine max HOM05D002628 ORTHO05D002785 2.2e-10 69.7 76 51.3
Sp7g10520 Schrenkiella parvula HOM05D002628 ORTHO05D002785 2.2e-10 69.7 78 42.3
Os08g0177300 Oryza sativa ssp. japonica HOM05D002628 ORTHO05D002785 2.9e-10 69.3 94 41.5
arahy.Tifrunner.gnm1.ann1.82MK2E Arachis hypogaea HOM05D002628 ORTHO05D002785 3.8e-10 68.9 75 45.3
Rhsim13G0045600 Rhododendron simsii HOM05D002628 ORTHO05D002785 3.8e-10 68.9 79 48.1
arahy.Tifrunner.gnm1.ann1.23VDWQ Arachis hypogaea HOM05D002628 ORTHO05D002785 4.9e-10 68.6 75 45.3
AL9U11010 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 6.4e-10 68.2 78 43.6
ECA247G3882 Erigeron canadensis HOM05D002628 ORTHO05D002785 1.1e-09 67.4 77 45.5
Lj3g0004121 Lotus japonicus HOM05D002628 ORTHO05D002785 1.9e-09 66.6 75 49.3
SHI31153 Sapria himalayana HOM05D002628 ORTHO05D002785 1.9e-09 66.6 79 46.8
BcaC01g03285 Brassica carinata HOM05D002628 ORTHO05D002785 2.4e-09 66.2 75 46.7
BolC3t17684H Brassica oleracea HOM05D002628 ORTHO05D002785 2.4e-09 66.2 75 46.7
Haze_24810 Corylus avellana HOM05D002628 ORTHO05D002785 2.4e-09 66.2 85 48.2
Glyma.18G169600 Glycine max HOM05D002628 ORTHO05D002785 2.4e-09 66.2 77 49.4
Lalb_Chr19g0125651 Lupinus albus HOM05D002628 ORTHO05D002785 3.2e-09 65.9 75 46.7
Oeu009720.1 Olea europaea HOM05D002628 ORTHO05D002785 3.2e-09 65.9 69 50.7
ATR0618G010 Amborella trichopoda HOM05D002628 ORTHO05D002785 4.1e-09 65.5 47 66.0
Phvul.008G126600 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 7.1e-09 64.7 77 49.4
Lsat_1_v5_gn_5_180401 Lactuca sativa HOM05D002628 ORTHO05D002785 9.2e-09 64.3 77 45.5
Glyma.03G081300 Glycine max HOM05D002628 ORTHO05D002785 1.2e-08 63.9 76 47.4
ATR0796G038 Amborella trichopoda HOM05D002628 ORTHO05D002785 1.6e-08 63.5 39 74.4
HPP92_002819 Vanilla planifolia HOM05D002628 ORTHO05D002785 1.6e-08 63.5 89 37.1
unitig_736.g22339 Utricularia gibba HOM05D002628 ORTHO05D002785 4.6e-08 62.0 86 38.4
CDE07G1586 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 6.0e-08 61.6 76 42.1
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 7.8e-08 61.2 76 40.8
Zm00001eb160310 Zea mays HOM05D002628 ORTHO05D002785 3.9e-07 58.9 63 42.9
HanXRQChr01g0015181 Helianthus annuus HOM05D002628 ORTHO05D002785 5.1e-07 58.5 88 39.8
Zm00001eb160300 Zea mays HOM05D002628 ORTHO05D002785 6.6e-07 58.2 63 42.9
ECA248G1308 Erigeron canadensis HOM05D002628 ORTHO05D002785 8.6e-07 57.8 77 40.3
Pp3c7_10800 Physcomitrium patens HOM05D002628 ORTHO05D002785 3.3e-06 55.8 69 47.8
HPP92_000545 Vanilla planifolia HOM05D002628 ORTHO05D002785 4.3e-06 55.5 79 40.5


User provided reference genes

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