Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 3639.4 1954 100.0
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2612.0 1982 73.8
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2327.7 1952 67.4
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2324.7 1942 68.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2324.3 1973 68.5
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2317.0 1874 68.1
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2286.5 1987 66.1
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2283.1 2008 66.3
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2280.4 1988 67.0
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2268.0 1966 67.7
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2267.3 1992 66.3
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2261.9 1941 67.0
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2261.1 1940 67.1
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2246.1 1947 66.9
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2244.9 1950 65.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2239.9 1940 66.3
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2238.0 1938 66.3
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2236.8 1952 65.9
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2229.9 1862 67.6
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2229.1 1941 66.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2228.8 1941 65.8
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2226.4 1690 72.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2224.5 1974 65.0
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2218.7 1885 67.3
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2215.7 1948 64.7
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2210.3 1968 64.9
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2207.9 1957 65.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2205.3 1951 65.5
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2201.8 1809 67.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2201.0 1934 65.3
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2196.8 1882 66.3
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2195.6 1936 64.5
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2194.1 1952 65.4
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2193.7 1947 65.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2191.4 1953 64.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2190.2 1981 65.1
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2187.9 1945 64.9
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2187.1 1944 64.5
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2185.6 1927 64.6
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2182.9 1982 64.3
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2180.2 1944 64.7
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2177.5 1948 64.5
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2169.8 1917 65.7
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2167.1 1960 64.2
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2163.7 2047 62.2
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2163.3 1853 65.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2157.1 1906 65.6
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2147.5 1896 65.2
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2143.2 1940 63.7
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2140.9 1895 64.7
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2139.8 1963 64.0
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2138.6 1933 63.9
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2126.7 1794 65.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2125.9 1946 63.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2123.2 1930 63.6
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2119.7 1969 63.1
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2115.5 1835 63.9
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2111.6 1954 63.2
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2108.6 1938 63.9
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2104.7 1950 63.3
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2104.3 1956 62.7
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2101.6 1932 63.1
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2101.2 1931 63.1
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2099.7 1966 63.3
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2099.3 1950 63.5
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2097.4 1844 63.3
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2090.8 1857 63.3
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2086.6 1830 63.8
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 2082.8 1952 62.4
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2077.8 1936 62.3
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2068.9 1941 62.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2060.4 1805 63.6
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2054.3 1831 63.4
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2036.9 1834 62.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 2033.8 1899 61.7
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2033.5 1944 61.7
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2031.1 1970 61.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 2026.9 1957 59.9
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2021.1 1833 62.6
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2015.4 1789 64.8
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2014.6 1924 61.4
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1999.6 1875 61.0
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1997.2 1933 62.0
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1979.1 1978 61.1
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1947.9 1866 60.1
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1890.2 1864 59.1
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1884.8 1971 57.5
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1883.6 1906 57.6
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1883.2 1725 61.7
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1781.9 1901 54.2
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1757.7 1959 53.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1739.2 1903 53.5
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1731.8 1917 53.9
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1731.8 1883 54.3
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1730.3 1884 53.9
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1728.8 1893 53.7
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1727.2 1893 53.5
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1727.2 1893 53.5
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1726.1 1890 53.8
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1725.7 1888 53.7
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1725.3 1878 53.9
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1725.3 1915 53.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1716.0 1908 53.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1709.5 1981 53.5
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1704.1 1508 66.0
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1698.7 1907 53.2
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1696.4 1860 53.1
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1694.9 1909 53.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1546.6 1904 49.6
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1546.6 1904 49.6
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1545.4 1949 49.3
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1516.1 1872 50.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1503.8 1236 68.1
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1498.4 1250 65.7
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1453.7 1954 49.2
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1448.3 1981 49.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1406.7 1236 65.5
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1368.2 1366 56.9
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1261.9 1085 67.2
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1258.0 1779 45.8
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1187.9 1543 50.4
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1146.3 921 67.9
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1120.9 1058 63.6
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1107.0 1348 52.0
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 2.5e-292 1010.0 874 65.4
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 6.2e-283 978.8 1620 41.2
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.0e-282 976.1 849 66.7
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 6.4e-280 968.8 1476 45.9
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 7.3e-276 955.3 879 61.3
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.3e-268 928.7 793 65.4
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.9e-252 877.5 1839 35.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.8e-202 711.4 620 65.6
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.3e-197 694.5 670 57.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.0e-189 669.1 656 55.8
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 3.3e-175 620.9 726 51.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 6.2e-166 590.1 501 62.7
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.6e-161 573.9 451 73.4
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 5.1e-152 543.9 639 50.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.9e-147 528.1 537 60.1
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-142 511.9 532 59.4
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 9.6e-127 459.9 1243 30.3
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.7e-118 431.4 419 58.9
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 5.1e-112 411.0 462 53.7
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 7.5e-79 300.8 2077 23.4
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.3e-78 300.1 425 43.1
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.0e-77 294.3 671 33.7
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.5e-76 291.6 529 37.4
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.1e-73 281.2 224 72.3
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.5e-71 276.6 876 31.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.3e-67 263.5 477 40.3
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.8e-64 253.1 197 73.6
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 8.9e-64 250.8 272 67.6
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.3e-48 199.5 204 52.5
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.4e-45 189.5 188 73.9
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.7e-35 156.8 228 50.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.6e-25 123.6 168 48.8
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.8e-16 93.6 83 56.6
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.9e-14 86.3 63 65.1
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 1.9e-13 83.6 129 65.9
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.8e-11 77.0 99 46.5
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.5e-10 73.9 54 64.8
MBI14_g11886_MAGBIO Magnolia biondii HOM05D056533 ORTHO05D018021 3.7e-09 69.3 42 85.7
MBI05_g22526_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D018021 1.1e-08 67.8 42 83.3
MBI05_g34595_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 1.1e-08 67.8 42 83.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.1e-08 66.2 33 84.8
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 9.0e-08 64.7 99 40.4
MBI08_g04317_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 1.5e-07 63.9 42 81.0
MBI17_g23594_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 2.0e-07 63.5 42 81.0
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.7e-06 60.5 168 32.1


User provided reference genes

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