Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03645 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 4.9e-240 834.3 510 100.0
TAR371G0383 Trochodendron aralioides HOM05D000464 ORTHO05D006292 3.3e-180 635.6 510 70.4
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 7.2e-175 617.8 504 65.9
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 1.6e-174 616.7 510 63.7
Nn4g22524 Nelumbo nucifera HOM05D000464 ORTHO05D006292 2.3e-173 612.8 509 71.9
PSO067G0023 Papaver somniferum HOM05D000464 ORTHO05D006292 1.5e-172 610.1 510 68.4
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 9.8e-172 607.4 510 65.3
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.3e-171 607.1 507 61.7
Manes.14G056900 Manihot esculenta HOM05D000464 ORTHO05D006292 3.1e-170 602.4 510 69.8
CiPaw.11G014000 Carya illinoinensis HOM05D000464 ORTHO05D006292 9.1e-170 600.9 507 66.1
Potri.015G087200 Populus trichocarpa HOM05D000464 ORTHO05D006292 5.0e-168 595.1 510 67.3
Thecc.03G119100 Theobroma cacao HOM05D000464 ORTHO05D006292 9.5e-167 590.9 510 65.9
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 4.7e-166 588.6 507 61.5
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.0e-165 587.4 510 59.2
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 1.4e-165 587.0 510 62.7
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.4e-165 587.0 510 59.0
Hma1.2p1_0046F.1_g027400 Hydrangea macrophylla HOM05D000464 ORTHO05D006292 2.0e-164 583.2 506 64.6
MD14G1166400 Malus domestica HOM05D000464 ORTHO05D006292 5.7e-164 581.6 507 65.5
FAN08G0579 Fragaria x ananassa HOM05D000464 ORTHO05D006292 3.7e-163 578.9 507 67.3
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.7e-163 578.9 510 63.1
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 1.1e-162 577.4 507 62.5
FAN13G2293 Fragaria x ananassa HOM05D000464 ORTHO05D006292 1.1e-162 577.4 507 67.5
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 1.1e-162 577.4 510 62.4
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 1.8e-162 576.6 506 60.3
FvH4_5g06790 Fragaria vesca HOM05D000464 ORTHO05D006292 4.1e-162 575.5 510 66.9
TWI39G0801 Tripterygium wilfordii HOM05D000464 ORTHO05D006292 4.1e-162 575.5 510 66.7
FAN04G0526 Fragaria x ananassa HOM05D000464 ORTHO05D006292 9.2e-162 574.3 507 66.3
Phvul.003G207100 Phaseolus vulgaris HOM05D000464 ORTHO05D006292 9.2e-162 574.3 507 60.9
FAN18G1884 Fragaria x ananassa HOM05D000464 ORTHO05D000408 1.2e-161 573.9 507 67.1
Cfa009511 Carpinus fangiana HOM05D000464 ORTHO05D000408 1.0e-160 570.9 507 65.9
Nitab4.5_0000510g0020 Nicotiana tabacum HOM05D000464 ORTHO05D006292 1.3e-160 570.5 509 64.4
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 1.1e-159 567.4 507 60.7
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 1.9e-159 566.6 508 59.8
THA.LOC104824993 Tarenaya hassleriana HOM05D000464 ORTHO05D006292 2.5e-159 566.2 510 63.5
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 4.3e-159 565.5 507 60.2
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 7.3e-159 564.7 507 64.3
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 2.8e-158 562.8 507 63.3
CANSAT80G2689 Cannabis sativa HOM05D000464 ORTHO05D006292 4.7e-158 562.0 510 65.3
CAN.G472.58 Capsicum annuum HOM05D000464 ORTHO05D006292 8.0e-158 561.2 507 59.8
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 1.0e-157 560.8 507 63.7
Eucgr.B00173 Eucalyptus grandis HOM05D000464 ORTHO05D006292 1.4e-157 560.5 510 64.9
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.8e-157 560.1 510 58.6
Lj1g0006305 Lotus japonicus HOM05D000464 ORTHO05D006292 2.3e-157 559.7 507 59.8
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 2.3e-157 559.7 505 62.4
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 5.2e-157 558.5 510 58.4
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 6.8e-157 558.1 507 62.3
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 8.9e-157 557.8 507 61.3
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.2e-156 557.4 507 62.1
Sc04g0001170 Simmondsia chinensis HOM05D000464 ORTHO05D006292 1.2e-156 557.4 510 65.3
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 9.8e-156 554.3 510 55.5
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 9.8e-156 554.3 510 60.6
Manes.06G112800 Manihot esculenta HOM05D000464 ORTHO05D006292 1.7e-155 553.5 510 61.8
BcaB08g35394 Brassica carinata HOM05D000464 ORTHO05D006292 2.2e-155 553.1 507 60.4
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 4.9e-155 552.0 510 60.4
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.1e-154 550.8 501 55.3
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 1.1e-154 550.8 501 56.9
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.4e-154 550.4 507 57.0
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 2.4e-154 549.7 512 56.2
QL10p005870 Quercus lobata HOM05D000464 ORTHO05D006292 5.4e-154 548.5 504 64.9
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 9.2e-154 547.7 501 55.1
Lsat_1_v5_gn_1_28641 Lactuca sativa HOM05D000464 ORTHO05D006292 9.2e-154 547.7 505 57.6
Prupe.5G160700 Prunus persica HOM05D000464 ORTHO05D006292 9.2e-154 547.7 510 69.0
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 9.2e-154 547.7 511 56.6
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 1.2e-153 547.4 507 58.6
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 1.6e-153 547.0 501 60.9
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 2.0e-153 546.6 510 57.8
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 4.6e-153 545.4 528 58.9
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 6.0e-153 545.0 510 54.9
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 2.3e-152 543.1 507 58.2
Actinidia36765 Actinidia chinensis HOM05D000464 ORTHO05D006292 3.0e-152 542.7 510 61.2
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 3.0e-152 542.7 501 54.7
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 1.9e-151 540.0 510 57.6
Ciclev10019772m.g Citrus clementina HOM05D000464 ORTHO05D006292 3.3e-151 539.3 511 64.8
Lj5A133T97 Lonicera japonica HOM05D000464 ORTHO05D006292 5.6e-151 538.5 507 58.4
Duzib205G1058 Durio zibethinus HOM05D000464 ORTHO05D006292 1.2e-150 537.3 510 60.6
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 1.2e-150 537.3 507 55.6
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 2.1e-150 536.6 507 59.6
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 1.4e-149 533.9 507 58.0
MSTRG.4338 Avicennia marina HOM05D000464 ORTHO05D006292 8.9e-149 531.2 510 59.8
Atru.chr9.967 Acer truncatum HOM05D000464 ORTHO05D000408 1.2e-148 530.8 509 58.5
Sed0016445 Sechium edule HOM05D000464 ORTHO05D006292 9.8e-148 527.7 510 59.0
HPP92_027101 Vanilla planifolia HOM05D000464 ORTHO05D006292 9.8e-148 527.7 506 54.0
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 4.9e-147 525.4 510 57.3
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 6.4e-147 525.0 464 62.7
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 3.2e-146 522.7 510 58.8
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.2e-146 522.7 500 56.0
RcHm_v2.0_Chr7g0191771 Rosa chinensis HOM05D000464 ORTHO05D006292 5.4e-146 521.9 466 66.5
PGSC0003DMG402015159 Solanum tuberosum HOM05D000464 ORTHO05D006292 5.4e-146 521.9 507 54.8
Peaxi162Scf00089g01023 Petunia axillaris HOM05D000464 ORTHO05D006292 1.0e-144 517.7 466 61.8
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 2.3e-144 516.5 505 55.8
Lj9A440T62 Lonicera japonica HOM05D000464 ORTHO05D006292 6.6e-144 515.0 466 65.9
Lalb_Chr12g0202001 Lupinus albus HOM05D000464 ORTHO05D006292 1.5e-143 513.8 507 54.0
MD06G1161200 Malus domestica HOM05D000464 ORTHO05D006292 7.3e-143 511.5 466 63.9
Gorai.006G269900 Gossypium raimondii HOM05D000464 ORTHO05D006292 4.7e-142 508.8 510 59.6
Gohir.A09G244600 Gossypium hirsutum HOM05D000464 ORTHO05D006292 8.1e-142 508.1 510 57.1
Gohir.D09G245500 Gossypium hirsutum HOM05D000464 ORTHO05D006292 8.1e-142 508.1 510 59.6
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 3.1e-141 506.1 510 57.5
Ca_16109_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 5.8e-140 501.9 507 54.4
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 9.9e-140 501.1 507 57.0
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 2.2e-139 500.0 507 55.4
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 3.7e-139 499.2 507 56.4
Rhsim08G0181600 Rhododendron simsii HOM05D000464 ORTHO05D006292 1.4e-138 497.3 507 58.6
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 2.1e-137 493.4 507 55.2
Ah.15g095450 Amaranthus hybridus HOM05D000464 ORTHO05D006292 8.6e-136 488.0 497 59.8
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 3.3e-135 486.1 439 61.0
SalBow6G1450 Salvia bowleyana HOM05D000464 ORTHO05D006292 3.6e-134 482.6 501 56.5
SalBow6G2987 Salvia bowleyana HOM05D000464 ORTHO05D006292 3.6e-134 482.6 501 56.5
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 8.9e-133 478.0 505 57.0
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.4e-132 476.1 462 55.4
GSVIVG01007587001 Vitis vinifera HOM05D000464 ORTHO05D006292 7.6e-132 474.9 510 60.0
Nn3g16633 Nelumbo nucifera HOM05D000464 ORTHO05D006292 6.4e-131 471.9 372 72.8
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 2.1e-129 466.8 509 49.5
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 3.5e-129 466.1 512 50.8
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 3.9e-128 462.6 507 50.5
Nitab4.5_0001812g0090 Nicotiana tabacum HOM05D000464 ORTHO05D006292 1.0e-120 438.0 442 53.8
HPP92_021440 Vanilla planifolia HOM05D000464 ORTHO05D006292 1.1e-117 427.9 508 45.5
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 1.2e-116 424.5 397 61.5
Sopen03g030860 Solanum pennellii HOM05D000464 ORTHO05D006292 8.4e-115 418.3 386 60.1
Solyc03g111740.3 Solanum lycopersicum HOM05D000464 ORTHO05D006292 4.2e-114 416.0 386 60.1
Os03g0746600 Oryza sativa ssp. japonica HOM05D000464 ORTHO05D006292 6.7e-112 408.7 510 47.6
Zm00001eb057050 Zea mays HOM05D000464 ORTHO05D006292 4.3e-111 406.0 509 52.3
SEGI_39654 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 1.5e-103 380.9 457 52.1
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 9.4e-90 335.1 508 38.2
Medtr4g007500 Medicago truncatula HOM05D000464 ORTHO05D006292 1.2e-89 334.7 398 50.8
Mapoly0102s0055 Marchantia polymorpha HOM05D000464 ORTHO05D006292 4.3e-87 326.2 506 37.9
SMO203G0251 Selaginella moellendorffii HOM05D000464 ORTHO05D006292 4.3e-87 326.2 510 39.4
Pp3c2_6010 Physcomitrium patens HOM05D000464 ORTHO05D006292 1.4e-85 321.2 500 37.2
Gorai.008G203700 Gossypium raimondii HOM05D000464 ORTHO05D006292 3.3e-79 300.1 510 38.2
Oeu045491.1 Olea europaea HOM05D000464 ORTHO05D000397 7.4e-79 298.9 301 54.5
CBR_g12113 Chara braunii HOM05D000464 ORTHO05D006292 1.1e-77 295.0 461 42.1
unitig_21.g20437 Utricularia gibba HOM05D000464 ORTHO05D006292 5.7e-63 246.1 193 59.6
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 2.8e-62 243.8 303 42.9
Sopen03g030870 Solanum pennellii HOM05D000234 ORTHO05D001258 8.2e-62 242.3 256 51.2
Pp3c1_39330 Physcomitrium patens HOM05D000464 ORTHO05D006292 1.6e-57 228.0 500 32.8
unitig_21.g20438 Utricularia gibba HOM05D000464 ORTHO05D006292 1.2e-52 211.8 358 38.5
Gohir.A12G186901 Gossypium hirsutum HOM05D000464 ORTHO05D006292 3.6e-49 200.3 244 47.5
CBR_g37122 Chara braunii HOM05D000464 ORTHO05D006292 1.4e-45 188.3 461 28.9
Actinidia19369 Actinidia chinensis HOM05D000464 ORTHO05D006292 1.4e-40 171.8 155 56.8
HPP92_021406 Vanilla planifolia HOM05D001244 ORTHO05D001076 1.1e-34 152.1 138 63.0
Lsat_1_v5_gn_6_51760 Lactuca sativa HOM05D000464 ORTHO05D006292 2.5e-34 151.0 148 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4579 Anthoceros agrestis HOM05D000464 ORTHO05D006292 9.5e-34 149.1 521 27.4
Sc23g0006430 Simmondsia chinensis HOM05D000464 ORTHO05D006292 4.4e-31 140.2 300 31.7
Dinv38497 Davidia involucrata HOM05D000068 ORTHO05D000084 1.4e-29 135.2 104 70.2
MCO16G619 Micromonas commoda HOM05D000464 ORTHO05D006292 1.4e-29 135.2 493 23.9
Peaxi162Scf00763g00043 Petunia axillaris HOM05D001333 ORTHO05D001208 1.4e-29 135.2 256 32.0
RcHm_v2.0_Chr3g0455571 Rosa chinensis HOM05D000464 ORTHO05D006292 4.1e-21 107.1 105 52.4
Actinidia08841 Actinidia chinensis HOM05D000464 ORTHO05D006292 7.8e-20 102.8 108 50.0
TAR622G0239 Trochodendron aralioides HOM05D000464 ORTHO05D006292 3.6e-17 94.0 56 78.6
Glyma.08G291750 Glycine max HOM05D000464 ORTHO05D006292 8.1e-17 92.8 89 60.7
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 4.9e-14 83.6 91 50.5
AagrBONN_evm.TU.Sc2ySwM_344.119 Anthoceros agrestis HOM05D000464 ORTHO05D006292 1.6e-12 78.6 79 45.6
AagrBONN_evm.TU.Sc2ySwM_368.2619 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-11 75.5 97 42.3
Medtr6g027280 Medicago truncatula HOM05D000464 ORTHO05D019055 3.0e-11 74.3 153 36.6
Sabra12G0065600 Salix brachista HOM05D000464 ORTHO05D000408 3.9e-11 73.9 132 33.3
PRCOL_00006710 Prasinoderma coloniale HOM05D000464 ORTHO05D006292 8.7e-11 72.8 381 22.8
COL.COLO4_24753 Corchorus olitorius HOM05D000464 ORTHO05D006292 2.1e-09 68.2 82 48.8
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 1.8e-08 65.1 184 24.5
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 1.5e-07 62.0 184 23.9
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 2.0e-07 61.6 184 23.4
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 5.8e-07 60.1 184 22.8
Prupe.3G290400 Prunus persica HOM05D004386 ORTHO05D005247 5.8e-07 60.1 198 27.3
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 5.8e-07 60.1 184 22.8
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 9.9e-07 59.3 184 23.4
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 9.9e-07 59.3 184 23.4
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 9.9e-07 59.3 184 23.4
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 9.9e-07 59.3 184 23.4
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.3e-06 58.9 303 19.8
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 1.3e-06 58.9 184 22.3
RcHm_v2.0_Chr2g0119791 Rosa chinensis HOM05D006430 ORTHO05D007585 1.3e-06 58.9 300 20.3
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 1.7e-06 58.5 296 30.1
BcaC07g40817 Brassica carinata HOM05D000453 ORTHO05D000387 2.2e-06 58.2 169 25.4
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 2.2e-06 58.2 184 23.4
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 2.2e-06 58.2 180 27.8
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 3.8e-06 57.4 184 23.4
CBR_g8662 Chara braunii HOM05D001610 ORTHO05D001585 3.8e-06 57.4 298 29.9
Solyc07g044850.3 Solanum lycopersicum HOM05D001610 ORTHO05D001585 3.8e-06 57.4 117 33.3
Sopen07g023410 Solanum pennellii HOM05D001610 ORTHO05D001585 3.8e-06 57.4 117 33.3
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 4.9e-06 57.0 184 22.3
Haze_07636 Corylus avellana HOM05D000007 ORTHO05D000017 4.9e-06 57.0 249 22.1
MD16G1177700 Malus domestica HOM05D002999 ORTHO05D003137 4.9e-06 57.0 225 24.4
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 6.4e-06 56.6 170 27.1
Zm00001eb173190 Zea mays HOM05D001610 ORTHO05D001585 6.4e-06 56.6 118 34.7
HanXRQChr02g0042801 Helianthus annuus HOM05D001610 ORTHO05D001585 8.4e-06 56.2 229 21.0
MD13G1176000 Malus domestica HOM05D002999 ORTHO05D003137 8.4e-06 56.2 225 25.3


User provided reference genes

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