Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 6.6e-121 437.6 251 100.0
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 8.0e-26 121.7 142 47.2
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-23 114.4 168 41.1
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.8e-23 113.2 177 37.3
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 4.9e-23 112.5 157 42.0
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 8.3e-23 111.7 168 41.1
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.8e-22 110.5 176 37.5
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 5.4e-22 109.0 171 40.4
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 5.4e-22 109.0 147 44.2
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 5.4e-22 109.0 154 42.2
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 7.0e-22 108.6 171 35.7
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 9.2e-22 108.2 144 43.8
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 9.2e-22 108.2 123 41.5
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.6e-21 107.5 166 39.8
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.6e-21 107.5 167 41.9
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.5e-21 106.3 166 39.2
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 5.9e-21 105.5 140 39.3
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.9e-21 105.5 158 40.5
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 7.7e-21 105.1 133 43.6
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.0e-20 104.8 137 42.3
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.0e-20 104.8 185 38.9
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.3e-20 104.4 138 42.8
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.3e-20 104.4 140 43.6
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.3e-20 104.4 166 39.2
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.3e-20 104.4 148 41.2
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.7e-20 104.0 140 38.6
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.7e-20 104.0 140 38.6
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.7e-20 104.0 140 38.6
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-20 103.6 134 41.0
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.3e-20 103.6 158 41.1
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 3.8e-20 102.8 173 39.9
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 6.6e-20 102.1 157 39.5
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.5e-19 100.9 134 38.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.5e-19 100.9 174 37.9
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 3.3e-19 99.8 158 40.5
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 3.3e-19 99.8 158 41.8
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.3e-19 99.8 168 37.5
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 4.3e-19 99.4 167 35.3
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 4.3e-19 99.4 167 35.3
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.3e-19 99.4 183 32.8
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 7.3e-19 98.6 133 38.3
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 9.5e-19 98.2 165 37.0
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.6e-18 97.4 167 34.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.6e-18 97.4 148 38.5
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.6e-18 97.4 146 37.7
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 2.1e-18 97.1 133 38.3
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.1e-18 97.1 142 40.1
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 2.8e-18 96.7 140 41.4
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 3.6e-18 96.3 173 35.3
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 4.7e-18 95.9 130 38.5
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.7e-18 95.9 170 38.2
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 6.1e-18 95.5 164 36.0
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 8.0e-18 95.1 161 37.3
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 8.0e-18 95.1 169 36.7
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.0e-17 94.7 139 41.0
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 1.0e-17 94.7 137 38.7
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.4e-17 94.4 173 35.8
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.8e-17 94.0 140 39.3
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.8e-17 94.0 140 37.1
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.8e-17 94.0 171 35.7
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 2.3e-17 93.6 135 37.0
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 2.3e-17 93.6 138 39.1
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.3e-17 93.6 171 35.7
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 3.0e-17 93.2 129 38.0
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.0e-17 92.8 163 38.0
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 6.8e-17 92.0 168 37.5
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 8.9e-17 91.7 148 35.8
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.2e-16 91.3 135 40.0
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.5e-16 90.9 137 36.5
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 1.5e-16 90.9 134 36.6
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 2.0e-16 90.5 160 35.0
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 2.6e-16 90.1 167 35.9
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 3.4e-16 89.7 134 38.1
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 4.4e-16 89.4 145 37.2
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 4.4e-16 89.4 126 37.3
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 5.7e-16 89.0 139 37.4
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 7.5e-16 88.6 141 36.9
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.2e-15 87.0 161 35.4
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.2e-15 87.0 138 39.1
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.9e-15 86.7 141 37.6
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.7e-15 86.3 136 35.3
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 4.9e-15 85.9 152 33.6
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 8.3e-15 85.1 131 38.2
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.1e-14 84.7 159 36.5
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.1e-14 84.7 135 39.3
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.4e-14 84.3 172 32.6
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 1.4e-14 84.3 170 32.4
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 1.8e-14 84.0 170 32.4
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 2.4e-14 83.6 168 34.5
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 4.1e-14 82.8 143 37.1
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 7.0e-14 82.0 129 38.0
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.6e-13 80.9 157 33.1
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 2.7e-13 80.1 163 33.1
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 2.7e-13 80.1 149 35.6
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 7.8e-13 78.6 211 27.0
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.0e-12 78.2 148 37.2
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 3.0e-12 76.6 144 35.4
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 3.0e-12 76.6 135 37.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.0e-12 76.6 138 34.1
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 6.6e-12 75.5 144 35.4
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 6.6e-12 75.5 144 35.4
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 6.6e-12 75.5 144 35.4
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.1e-11 74.7 109 40.4
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.1e-11 74.7 109 40.4
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.5e-11 74.3 140 37.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.5e-11 74.3 146 35.6
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 3.3e-11 73.2 81 46.9
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 7.3e-11 72.0 207 30.0
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 7.3e-11 72.0 141 32.6
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 9.5e-11 71.6 100 40.0
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 9.5e-11 71.6 169 30.2
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 9.5e-11 71.6 136 36.0
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 1.6e-10 70.9 206 29.6
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.6e-10 70.9 127 31.5
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 2.1e-10 70.5 128 33.6
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 2.1e-10 70.5 128 31.2
Aqoxy7G03749 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.8e-10 70.1 47 63.8
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 4.7e-10 69.3 178 30.9
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.7e-10 69.3 168 28.0
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 6.2e-10 68.9 128 31.2
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 8.0e-10 68.6 146 32.2
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 2.3e-09 67.0 112 37.5
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.3e-09 67.0 119 34.5
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 3.1e-09 66.6 130 34.6
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 5.2e-09 65.9 165 31.5
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 5.2e-09 65.9 129 31.8
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 6.8e-09 65.5 155 32.9
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 6.8e-09 65.5 64 48.4
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 8.9e-09 65.1 132 36.4
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.5e-08 64.3 93 35.5
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.5e-08 64.3 148 34.5
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 1.5e-08 64.3 120 35.0
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 1.5e-08 64.3 128 33.6
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 2.0e-08 63.9 107 37.4
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.0e-08 63.9 139 34.5
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 2.0e-08 63.9 100 36.0
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.6e-08 63.5 57 52.6
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 2.6e-08 63.5 110 42.7
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 2.6e-08 63.5 128 33.6
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.4e-08 63.2 129 32.6
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 4.4e-08 62.8 114 38.6
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.4e-08 62.8 113 38.1
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 4.4e-08 62.8 113 34.5
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 7.5e-08 62.0 146 29.5
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 9.8e-08 61.6 171 28.7
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 9.8e-08 61.6 122 35.2
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 9.8e-08 61.6 151 29.1
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 9.8e-08 61.6 54 53.7
Actinidia37202 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.2e-07 60.5 85 42.4
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.9e-07 60.1 102 39.2
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.9e-07 60.1 76 34.2
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 3.7e-07 59.7 98 39.8
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 4.9e-07 59.3 112 35.7
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 6.4e-07 58.9 102 38.2
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 8.3e-07 58.5 101 40.6
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 8.3e-07 58.5 72 44.4
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.4e-06 57.8 145 30.3
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.4e-06 57.8 117 37.6
Aqoxy1G03565 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 1.9e-06 57.4 94 36.2
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 2.4e-06 57.0 112 33.0
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.4e-06 57.0 101 36.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.2e-06 56.6 122 31.1
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 4.1e-06 56.2 47 57.4
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 4.1e-06 56.2 143 30.8
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 4.1e-06 56.2 113 35.4
Pp3c19_17370 Physcomitrium patens HOM05D048456 ORTHO05D050331 5.4e-06 55.8 60 41.7
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 5.4e-06 55.8 75 40.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 7.0e-06 55.5 159 31.4
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.0e-06 55.5 105 32.4
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 7.0e-06 55.5 83 37.3
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 7.0e-06 55.5 71 46.5
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 9.2e-06 55.1 119 31.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 9.2e-06 55.1 141 29.1


User provided reference genes

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