Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 8.4e-258 893.3 482 100.0
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 2.3e-74 283.9 501 39.3
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 6.4e-72 275.8 491 44.0
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 1.2e-70 271.6 529 36.9
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 3.0e-69 266.9 522 39.5
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.1e-67 260.8 498 41.4
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.4e-66 258.1 496 40.7
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 6.8e-66 255.8 389 43.4
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.5e-65 254.6 390 42.1
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 4.6e-62 243.0 493 41.0
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 1.0e-61 241.9 484 40.1
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 1.3e-61 241.5 438 42.5
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.7e-61 241.1 394 41.4
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 8.6e-61 238.8 545 35.8
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 5.6e-60 236.1 452 39.4
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 1.2e-59 235.0 414 39.9
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 1.2e-59 235.0 434 39.2
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.6e-59 233.4 498 36.9
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 4.7e-59 233.0 382 40.3
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 6.2e-59 232.6 405 40.5
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 1.1e-58 231.9 539 37.5
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.1e-58 231.9 479 39.7
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 6.8e-58 229.2 528 36.7
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 2.0e-57 227.6 488 37.3
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 2.0e-57 227.6 409 39.1
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 2.2e-56 224.2 431 39.9
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 4.9e-56 223.0 383 41.0
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.9e-55 221.1 306 46.1
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 2.4e-55 220.7 399 39.8
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 3.2e-55 220.3 488 38.3
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 3.2e-55 220.3 443 37.0
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 9.2e-55 218.8 257 48.2
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 2.1e-54 217.6 453 36.0
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 2.7e-54 217.2 461 36.0
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 1.3e-53 214.9 225 54.2
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.7e-53 214.5 500 38.4
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 2.3e-53 214.2 470 35.1
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 3.0e-53 213.8 255 52.5
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 3.0e-53 213.8 465 34.8
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.9e-53 213.4 530 34.0
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 3.9e-53 213.4 465 34.8
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 5.1e-53 213.0 498 35.3
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 8.6e-53 212.2 544 33.5
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 8.6e-53 212.2 387 39.3
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 1.5e-52 211.5 381 41.2
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 1.9e-52 211.1 385 38.7
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.3e-52 210.3 376 39.6
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 3.3e-52 210.3 385 40.5
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 3.3e-52 210.3 392 39.5
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 4.3e-52 209.9 385 38.7
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 9.6e-52 208.8 382 37.7
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 9.6e-52 208.8 456 36.8
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 1.2e-51 208.4 395 40.3
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 1.2e-51 208.4 513 34.7
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 1.6e-51 208.0 457 36.8
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 2.1e-51 207.6 502 37.5
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 4.7e-51 206.5 382 38.2
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 4.7e-51 206.5 411 38.2
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 6.2e-51 206.1 523 35.4
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 6.8e-50 202.6 400 37.8
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 8.9e-50 202.2 455 36.7
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 2.6e-49 200.7 434 37.6
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 3.4e-49 200.3 457 37.2
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 3.4e-49 200.3 180 57.8
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 4.4e-49 199.9 429 37.3
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 5.8e-49 199.5 437 35.0
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 1.3e-48 198.4 422 34.6
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 2.9e-48 197.2 433 37.2
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 4.9e-48 196.4 382 37.4
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 4.9e-48 196.4 438 34.5
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 1.1e-47 195.3 407 34.6
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.4e-47 194.9 464 35.8
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.4e-47 194.9 432 35.4
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.4e-47 194.9 387 37.5
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 4.2e-47 193.4 506 34.0
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 5.4e-47 193.0 313 43.5
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 6.0e-46 189.5 389 37.5
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 1.0e-45 188.7 379 36.7
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.3e-45 188.3 379 38.8
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 5.1e-45 186.4 423 34.5
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 5.1e-45 186.4 522 33.5
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.9e-44 184.5 410 35.1
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 5.6e-44 183.0 466 36.9
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.6e-43 181.4 412 34.0
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 2.1e-43 181.0 412 34.0
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 8.1e-43 179.1 528 33.9
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 8.1e-43 179.1 438 34.7
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 9.0e-42 175.6 459 35.1
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.5e-41 174.9 382 36.1
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 7.6e-41 172.6 422 33.4
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 4.9e-40 169.9 413 33.2
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 6.4e-40 169.5 412 33.7
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 8.4e-40 169.1 383 34.5
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 8.4e-40 169.1 383 34.5
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 3.2e-39 167.2 412 33.5
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 7.1e-39 166.0 160 53.8
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.6e-38 164.9 319 37.3
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 4.3e-36 156.8 457 30.2
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 9.6e-36 155.6 393 33.8
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 9.9e-33 145.6 370 33.2
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 1.7e-32 144.8 312 35.6
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 3.8e-32 143.7 316 32.0
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 1.4e-31 141.7 164 45.7
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.9e-31 141.4 167 47.9
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 8.1e-27 125.9 269 33.5
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.2e-25 122.1 175 37.7
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 1.5e-25 121.7 323 29.4
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 2.6e-25 120.9 234 34.2
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 3.5e-22 110.5 131 45.8
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 1.3e-19 102.1 83 59.0
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 5.3e-18 96.7 112 50.0
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 2.5e-12 77.8 63 58.7
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 3.1e-10 70.9 150 34.0
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 6.9e-10 69.7 50 64.0


User provided reference genes

Program Settings