Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.7e-199 698.0 348 100.0
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.2e-174 615.1 394 81.0
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.7e-167 592.8 511 64.2
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 7.1e-166 587.4 388 77.3
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.1e-165 585.9 511 63.8
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 6.2e-162 574.3 506 62.6
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.4e-161 573.2 511 61.6
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 3.1e-161 572.0 505 62.2
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 4.1e-161 571.6 511 61.4
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 5.3e-161 571.2 473 64.7
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 5.3e-161 571.2 511 61.6
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 9.0e-161 570.5 511 61.4
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.5e-160 569.7 511 61.4
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 2.0e-160 569.3 511 61.1
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 2.0e-160 569.3 506 61.9
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 2.6e-160 568.9 504 62.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 3.4e-160 568.5 508 62.0
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 4.5e-160 568.2 504 62.1
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 4.5e-160 568.2 508 61.8
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 5.8e-160 567.8 512 61.7
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.8e-160 567.8 511 61.4
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 7.6e-160 567.4 511 60.9
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.3e-159 566.6 504 61.7
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.7e-159 566.2 508 61.6
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 2.9e-159 565.5 506 61.5
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 2.9e-159 565.5 511 60.7
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.9e-159 565.5 496 63.5
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 2.9e-159 565.5 502 62.0
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 3.8e-159 565.1 512 61.5
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.0e-159 564.7 504 61.5
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 6.5e-159 564.3 511 61.4
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.4e-158 563.1 512 61.1
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.4e-158 563.1 502 62.0
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 1.4e-158 563.1 511 60.5
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.9e-158 562.8 511 60.3
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.9e-158 562.8 502 62.0
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.9e-158 562.8 502 62.0
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.9e-158 562.8 502 62.0
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.9e-158 562.8 511 60.5
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 2.5e-158 562.4 511 60.5
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 3.2e-158 562.0 511 60.3
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 4.2e-158 561.6 513 60.6
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 5.5e-158 561.2 512 60.7
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 5.5e-158 561.2 502 61.8
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 7.2e-158 560.8 502 61.2
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 7.2e-158 560.8 502 61.4
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.2e-158 560.8 508 61.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 9.3e-158 560.5 504 60.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 9.3e-158 560.5 504 60.5
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 9.3e-158 560.5 511 60.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 9.3e-158 560.5 504 61.3
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.2e-157 560.1 511 60.3
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.6e-157 559.7 511 60.3
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 2.7e-157 558.9 504 60.3
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 2.7e-157 558.9 507 60.9
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.5e-157 558.5 509 60.5
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 3.5e-157 558.5 502 61.0
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 3.5e-157 558.5 506 60.5
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 3.5e-157 558.5 515 60.6
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 3.5e-157 558.5 506 60.5
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 4.6e-157 558.1 504 61.1
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 6.1e-157 557.8 511 59.5
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 7.9e-157 557.4 513 59.8
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 7.9e-157 557.4 504 60.9
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 7.9e-157 557.4 504 60.9
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.0e-156 557.0 505 59.4
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.3e-156 556.6 514 59.5
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.3e-156 556.6 513 59.6
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.3e-156 556.6 504 60.3
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 2.3e-156 555.8 504 60.1
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.3e-156 555.8 513 59.6
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.0e-156 555.4 504 61.1
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 3.9e-156 555.1 509 59.1
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 5.1e-156 554.7 513 59.5
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 5.1e-156 554.7 513 59.5
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 8.7e-156 553.9 513 59.6
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 8.7e-156 553.9 507 59.6
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.1e-155 553.5 504 59.9
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.1e-155 553.5 504 59.9
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.1e-155 553.5 511 59.7
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.5e-155 553.1 511 59.7
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 7.4e-155 550.8 504 60.5
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 2.2e-154 549.3 503 60.6
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.7e-154 548.5 536 57.8
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 6.3e-154 547.7 525 58.3
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.4e-153 546.6 500 60.8
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.8e-153 546.2 548 56.9
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 3.1e-153 545.4 503 60.0
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 9.0e-153 543.9 541 57.7
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.6e-152 542.3 504 59.1
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.3e-151 540.0 442 66.7
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.3e-151 540.0 508 60.0
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.7e-151 539.7 511 58.7
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 5.0e-151 538.1 504 60.3
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.1e-150 537.0 566 54.9
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-150 537.0 502 58.4
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-150 536.6 502 58.4
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.1e-145 518.8 470 61.1
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.9e-142 509.6 488 56.8
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.1e-134 483.8 508 55.3
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 4.7e-133 478.4 470 56.8
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 2.9e-127 459.1 436 58.5
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 8.0e-125 451.1 414 61.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.0e-124 450.7 489 51.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 6.8e-124 448.0 414 60.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.8e-116 423.3 492 49.4
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.1e-113 414.1 342 65.5
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.1e-113 412.5 403 57.1
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.4e-113 411.8 448 53.8
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.3e-110 402.1 420 56.7
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.5e-107 393.7 393 58.3
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.2e-106 389.8 349 63.0
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.6e-96 355.5 406 52.0
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.7e-95 353.6 421 51.3
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-93 347.4 499 43.9
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.1e-92 342.8 507 45.2
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.7e-90 337.0 389 52.4
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 5.1e-87 325.5 160 96.2
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.1e-86 324.3 460 47.0
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-86 324.3 295 59.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.5e-86 321.2 160 94.4
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.1e-85 320.1 160 93.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.3e-84 316.6 161 91.9
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.1e-81 305.8 203 79.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.2e-81 304.7 203 79.8
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.0e-79 301.2 218 68.8
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 3.1e-76 289.7 340 53.2
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-70 270.8 146 84.9
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 4.0e-68 262.7 157 83.4
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.2e-67 261.2 159 83.0
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-66 257.3 296 51.0
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.4e-66 255.0 214 67.3
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.5e-64 249.6 149 83.9
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-60 238.0 203 59.1
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 1.6e-53 214.2 105 93.3
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 5.3e-52 209.1 133 79.7
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.8e-50 203.0 226 54.0
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 4.6e-48 196.1 105 90.5
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 9.6e-46 188.3 150 64.7
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-42 177.9 113 78.8
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 2.5e-33 147.1 98 77.6
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.7e-30 135.2 66 97.0
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-27 128.3 75 85.3
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 2.0e-27 127.5 73 90.4
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.0e-27 127.5 111 60.4
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 2.6e-27 127.1 88 77.3
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 7.7e-27 125.6 134 56.7
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-26 123.6 92 71.7
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-25 120.6 92 70.7
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 3.3e-22 110.2 55 96.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.8e-21 107.1 182 42.3
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 3.7e-21 106.7 73 78.1
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 4.8e-21 106.3 148 45.3
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-19 101.7 178 41.0
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.6e-19 100.5 58 84.5
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 8.0e-16 89.0 88 62.5
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 4.0e-15 86.7 44 86.4
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 3.7e-13 80.1 49 77.6
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.4e-12 77.4 94 47.9
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 5.5e-09 66.2 53 69.8
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 5.5e-09 66.2 53 69.8
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.4e-06 56.6 54 61.1
AagrBONN_evm.TU.Sc2ySwM_362.31 Anthoceros agrestis HOM05D011518 ORTHO05D076736 7.5e-06 55.8 31 80.6


User provided reference genes

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