Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 0.0e+00 1578.1 956 100.0
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 3.6e-300 1035.0 857 68.0
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 5.5e-293 1011.1 841 70.5
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.0e-291 1006.9 875 66.4
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.8e-272 943.0 857 61.1
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.0e-270 937.2 870 60.7
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 3.7e-265 918.7 854 60.7
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 3.1e-264 915.6 875 60.2
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 7.0e-264 914.4 850 62.9
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 4.2e-261 905.2 880 58.8
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 4.2e-261 905.2 868 58.6
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 7.2e-261 904.4 876 59.7
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 4.7e-260 901.7 865 59.3
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 6.1e-260 901.4 873 60.0
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 5.2e-259 898.3 851 58.8
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 2.0e-258 896.3 878 58.4
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.5e-258 894.4 863 59.1
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 2.4e-256 889.4 873 57.6
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 9.2e-256 887.5 844 59.0
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 3.5e-255 885.6 848 59.6
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 4.5e-255 885.2 850 60.1
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.0e-254 884.0 863 58.4
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.7e-254 883.2 868 58.1
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 5.0e-254 881.7 852 57.6
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.3e-253 879.0 856 58.2
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 3.3e-253 879.0 864 57.6
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.6e-252 876.7 858 57.9
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 2.3e-251 872.8 851 58.2
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.8e-251 871.3 858 57.6
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 2.0e-250 869.8 855 58.6
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 4.4e-250 868.6 858 57.6
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 1.9e-248 863.2 869 58.2
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 9.2e-248 860.9 856 57.0
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.6e-247 858.6 856 57.1
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 7.8e-247 857.8 847 58.0
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.5e-245 852.8 844 56.6
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 3.3e-245 852.4 861 56.7
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 8.0e-244 847.8 869 57.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 1.1e-243 847.4 875 56.8
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 5.2e-243 845.1 858 57.9
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 8.9e-243 844.3 877 55.6
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.4e-242 842.0 869 57.4
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 4.4e-242 842.0 866 57.4
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 9.8e-242 840.9 869 56.6
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.9e-240 836.6 881 56.2
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 7.0e-240 834.7 949 51.9
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.7e-238 830.1 868 56.8
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.3e-238 829.7 843 56.1
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 5.6e-237 825.1 844 56.6
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 2.8e-236 822.8 871 54.3
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.6e-236 822.4 927 55.0
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 4.7e-236 822.0 827 57.9
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.5e-234 817.0 801 58.7
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 2.0e-234 816.6 867 55.4
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 2.9e-233 812.8 866 55.0
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 2.4e-232 809.7 867 56.1
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 2.1e-231 806.6 863 54.2
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 6.0e-231 805.1 844 55.5
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.9e-229 800.0 877 54.0
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 7.3e-229 798.1 860 54.1
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.6e-228 797.0 907 51.6
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 2.1e-228 796.6 854 55.0
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 4.7e-228 795.4 800 57.0
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 4.0e-227 792.3 866 52.7
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 4.0e-227 792.3 875 53.5
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 2.0e-226 790.0 859 55.3
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.9e-225 786.2 803 55.5
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 2.9e-225 786.2 848 54.0
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 6.4e-225 785.0 870 53.3
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 2.4e-224 783.1 847 54.7
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 7.3e-221 771.5 854 53.4
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 7.6e-218 761.5 897 51.2
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 2.9e-217 759.6 877 53.2
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 3.8e-217 759.2 856 52.8
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.9e-216 756.9 860 53.6
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 5.4e-216 755.4 852 52.8
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.6e-215 753.8 852 52.7
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.0e-214 751.1 850 53.2
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.3e-213 745.7 884 52.0
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.1e-211 741.1 865 52.4
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.1e-211 741.1 863 51.4
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.2e-210 737.6 868 51.0
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.8e-209 732.6 864 52.8
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 7.1e-208 728.4 887 51.1
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 2.5e-205 719.9 761 54.5
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 3.3e-205 719.5 837 49.8
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 9.6e-205 718.0 866 50.8
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 4.5e-202 709.1 848 49.2
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 7.1e-200 701.8 859 48.5
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.8e-198 697.2 848 48.5
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 3.9e-198 696.0 838 48.0
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 3.9e-198 696.0 838 48.0
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 1.5e-197 694.1 859 48.1
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 1.5e-197 694.1 844 48.8
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.8e-195 687.2 853 48.7
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.9e-193 679.1 715 55.9
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.1e-189 667.9 863 48.0
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.2e-188 663.7 878 46.0
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 3.7e-188 662.9 592 59.8
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 3.1e-187 659.8 861 46.3
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 9.0e-187 658.3 864 46.6
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 6.5e-185 652.1 865 47.1
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 7.2e-184 648.7 856 46.0
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 2.7e-183 646.7 894 45.1
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 4.6e-183 646.0 870 46.8
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 3.3e-181 639.8 850 47.4
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.8e-180 636.0 856 45.6
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.6e-175 620.9 870 45.7
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.3e-174 617.1 486 66.5
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 2.7e-167 593.6 885 45.4
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 7.0e-163 578.9 478 63.2
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.5e-162 576.6 482 62.7
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 4.5e-162 576.2 886 43.0
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 1.0e-142 511.9 855 39.6
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.5e-120 438.3 557 46.5
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 6.2e-119 433.0 556 47.3
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.4e-102 377.9 486 48.6
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.1e-87 328.2 312 55.8
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 1.0e-84 319.3 398 47.5
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 1.3e-81 308.9 459 43.4
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.9e-72 278.5 261 55.6
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 4.3e-72 277.3 361 51.5
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 1.1e-70 272.7 409 47.9
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 3.1e-70 271.2 335 48.1
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 4.1e-70 270.8 297 51.5
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 7.4e-64 250.0 170 71.8
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 7.4e-64 250.0 610 32.0
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.1e-62 246.1 392 45.9
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 5.3e-62 243.8 728 28.4
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.8e-60 237.7 352 45.5
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 1.4e-54 219.2 168 62.5
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 7.7e-45 186.8 324 45.4
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 8.5e-44 183.3 321 43.9
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 7.0e-30 137.1 96 64.6
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 5.2e-25 120.9 152 50.7
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 8.9e-25 120.2 218 39.4
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.5e-24 119.4 152 50.7
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 3.2e-22 111.7 77 68.8
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.3e-20 105.5 88 56.8
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.5e-19 102.1 85 54.1
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 2.0e-16 92.4 65 72.3
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 7.8e-13 80.5 85 51.8
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 4.3e-11 74.7 91 47.3
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.8e-10 72.0 91 46.2
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 3.1e-09 68.6 39 74.4
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.4e-07 60.8 37 67.6
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 1.4e-06 59.7 61 50.8
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 1.4e-06 59.7 61 50.8
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.1e-06 57.4 131 38.9
EL10Ac7g17540 Beta vulgaris HOM05D000966 ORTHO05D019838 9.2e-06 57.0 60 50.0


User provided reference genes

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