Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 0.0e+00 2063.1 1185 100.0
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 0.0e+00 1132.5 1234 52.8
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1106.7 1242 52.2
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 4.9e-299 1031.6 1221 48.5
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 6.2e-286 988.0 1245 48.7
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 2.6e-284 982.6 1229 49.7
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 4.9e-283 978.4 1271 49.6
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 5.1e-272 941.8 1245 45.1
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 8.7e-272 941.0 1240 45.1
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.1e-271 940.6 1282 46.5
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 4.3e-271 938.7 1244 46.9
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.1e-269 934.1 1229 46.9
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.1e-269 932.6 1282 49.8
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 5.3e-269 931.8 1249 45.0
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 9.0e-269 931.0 1249 45.7
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 3.8e-267 925.6 1242 43.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 1.4e-266 923.7 1228 44.9
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 5.6e-263 911.8 1237 45.4
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 7.3e-263 911.4 1241 45.9
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.9e-258 896.7 1248 43.3
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 5.4e-258 895.2 1243 45.9
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 2.1e-257 893.3 1235 43.7
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.5e-255 886.3 1260 45.6
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 5.3e-253 878.6 900 52.8
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.0e-252 876.7 1232 44.5
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.7e-251 873.6 1229 43.1
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 2.7e-249 866.3 931 50.9
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 7.9e-249 864.8 918 51.5
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 3.9e-248 862.4 1242 43.7
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 8.7e-248 861.3 918 51.4
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 2.5e-247 859.8 1242 44.5
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.1e-246 856.7 1216 42.9
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 2.1e-246 856.7 990 48.7
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 3.7e-246 855.9 1268 43.7
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.4e-242 844.0 1247 44.0
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 2.1e-241 840.1 1236 42.8
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 4.6e-241 839.0 950 49.9
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 6.0e-241 838.6 1202 42.7
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.3e-240 836.6 1242 43.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.7e-239 832.0 825 54.5
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.4e-237 827.4 637 65.6
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.6e-236 823.2 881 50.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.0e-235 821.2 880 50.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.2e-235 820.1 1256 42.9
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.2e-234 815.8 1242 40.3
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.6e-233 813.9 1235 40.3
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.9e-232 809.3 658 61.7
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 7.4e-231 805.1 955 47.1
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 7.4e-231 805.1 1238 40.9
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.8e-230 803.1 916 48.8
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 3.7e-230 802.7 1242 42.4
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.8e-229 800.4 1227 42.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 3.1e-229 799.7 1242 40.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.0e-228 797.0 946 47.1
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.3e-227 794.3 1248 39.8
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-226 791.2 1249 40.8
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.1e-226 791.2 892 48.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 5.5e-226 788.9 960 46.6
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 7.2e-226 788.5 960 46.8
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 2.7e-225 786.6 1235 40.1
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 3.9e-224 782.7 923 47.5
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 5.7e-223 778.9 915 47.0
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.7e-222 777.3 918 47.8
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 3.7e-222 776.2 974 45.9
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 4.8e-222 775.8 921 47.2
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.4e-221 774.2 863 49.6
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 2.4e-221 773.5 915 47.1
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 2.4e-221 773.5 945 46.9
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 4.5e-220 769.2 883 49.2
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.3e-219 767.7 1252 42.5
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 2.7e-217 760.0 977 45.4
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.0e-216 758.1 938 45.9
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.0e-216 756.5 1211 40.0
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.7e-214 749.6 912 46.6
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 4.8e-214 749.2 902 46.2
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 8.2e-214 748.4 902 46.5
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 7.0e-213 745.3 959 45.2
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.0e-212 743.8 930 46.1
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 5.9e-212 742.3 912 45.8
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 7.7e-212 741.9 1229 38.5
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 5.0e-211 739.2 925 45.8
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.5e-210 737.6 1217 40.8
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 3.6e-209 733.0 1032 42.6
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 5.7e-207 725.7 884 46.7
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 7.5e-207 725.3 976 43.9
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.7e-206 724.2 883 47.1
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.4e-205 721.1 910 45.5
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.6e-204 717.6 910 45.4
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.0e-203 714.9 701 52.9
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 3.2e-202 709.9 953 44.5
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.6e-201 707.6 952 44.2
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 7.5e-199 698.7 934 44.3
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.3e-198 698.0 645 55.2
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 9.1e-197 691.8 921 44.5
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 2.0e-196 690.6 969 42.8
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.8e-193 680.2 1161 39.0
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.5e-191 672.2 1239 37.2
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.5e-191 672.2 1239 37.2
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 9.8e-191 671.8 944 44.4
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.6e-188 664.5 830 45.7
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 4.1e-181 639.8 780 47.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 9.9e-167 592.0 948 39.7
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 3.7e-166 590.1 836 42.6
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 2.8e-161 573.9 757 45.3
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 5.4e-157 559.7 956 38.6
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.8e-152 544.7 647 47.3
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.0e-147 527.3 526 53.8
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.8e-136 491.5 433 57.5
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.9e-136 489.6 750 40.5
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 6.0e-132 476.5 585 46.5
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 3.8e-126 457.2 609 44.3
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.1e-120 439.1 566 44.0
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.0e-110 406.0 733 35.7
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 2.5e-109 401.4 883 33.1
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.6e-95 355.5 595 39.8
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 5.9e-95 353.6 316 58.5
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.5e-93 348.2 338 52.7
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 3.4e-82 311.2 305 53.8
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.3e-81 309.3 901 30.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.1e-80 304.3 652 35.0
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.7e-79 301.6 281 54.8
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.5e-79 300.8 862 31.0
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 5.9e-79 300.4 862 30.9
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 2.0e-74 285.4 273 52.0
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.5e-66 259.2 404 38.6
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 6.2e-60 237.3 414 37.4
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 7.6e-34 150.6 561 33.5
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 7.4e-29 134.0 879 24.6
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.9e-24 119.4 294 27.9
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 7.1e-24 117.5 261 32.2
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.1e-23 115.9 277 30.3
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.3e-20 106.7 318 31.4
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.4e-08 66.6 52 51.9
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 1.6e-07 63.2 122 36.1
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.8e-06 59.7 142 32.4
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.3e-06 59.3 128 34.4


User provided reference genes

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