Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00456 Aquilegia oxysepala HOM05D000104 ORTHO05D004783 6.0e-56 220.7 119 100.0
Aqoxy5G01651 Aquilegia oxysepala HOM05D000104 ORTHO05D006241 4.1e-28 128.3 81 87.7
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 9.0e-28 127.1 81 87.7
Potri.019G129900 Populus trichocarpa HOM05D000104 ORTHO05D006241 1.7e-13 79.7 79 62.0
TAR381G0133 Trochodendron aralioides HOM05D000104 ORTHO05D006241 2.2e-13 79.3 81 60.5
Actinidia19178 Actinidia chinensis HOM05D000104 ORTHO05D006241 6.3e-13 77.8 79 62.0
Ciclev10024956m.g Citrus clementina HOM05D000104 ORTHO05D006241 8.2e-13 77.4 79 62.0
arahy.Tifrunner.gnm1.ann1.C2GR1Y Arachis hypogaea HOM05D000104 ORTHO05D006241 1.1e-12 77.0 79 59.5
Ca_24840_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006241 2.4e-12 75.9 76 61.8
Lj2g0008105 Lotus japonicus HOM05D000104 ORTHO05D006241 3.1e-12 75.5 81 59.3
Medtr5g020000 Medicago truncatula HOM05D000104 ORTHO05D006241 3.1e-12 75.5 64 68.8
Cc07_g09410 Coffea canephora HOM05D000104 ORTHO05D006241 5.3e-12 74.7 119 45.4
DCAR_017263 Daucus carota HOM05D000104 ORTHO05D006241 5.3e-12 74.7 79 60.8
Rhsim01G0038800 Rhododendron simsii HOM05D000104 ORTHO05D006241 5.3e-12 74.7 79 63.3
Hma1.2p1_0400F.1_g144480 Hydrangea macrophylla HOM05D000104 ORTHO05D006241 6.9e-12 74.3 66 66.7
arahy.Tifrunner.gnm1.ann1.5H7P5J Arachis hypogaea HOM05D000104 ORTHO05D006241 9.1e-12 73.9 79 58.2
Migut.L00514 Erythranthe guttata HOM05D000104 ORTHO05D006241 9.1e-12 73.9 77 61.0
Nitab4.5_0003233g0020 Nicotiana tabacum HOM05D000104 ORTHO05D006241 9.1e-12 73.9 81 59.3
Psat2g160360 Pisum sativum HOM05D000104 ORTHO05D006241 1.2e-11 73.6 76 61.8
Nn1g05024 Nelumbo nucifera HOM05D000104 ORTHO05D006241 1.5e-11 73.2 77 61.0
EL10Ac6g14940 Beta vulgaris HOM05D000104 ORTHO05D006241 2.0e-11 72.8 79 57.0
PGSC0003DMG400015477 Solanum tuberosum HOM05D000104 ORTHO05D006241 3.4e-11 72.0 114 46.5
Os03g0722400 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006241 4.5e-11 71.6 81 59.3
Sopen02g013810 Solanum pennellii HOM05D000104 ORTHO05D006241 5.9e-11 71.2 81 56.8
Hma1.2p1_0717F.1_g208150 Hydrangea macrophylla HOM05D000104 ORTHO05D006241 7.7e-11 70.9 77 59.7
Phvul.002G029500 Phaseolus vulgaris HOM05D000104 ORTHO05D006241 7.7e-11 70.9 74 56.8
Solyc02g062780.4 Solanum lycopersicum HOM05D000104 ORTHO05D006241 7.7e-11 70.9 72 61.1
VMungo1215G1562 Vigna mungo HOM05D000104 ORTHO05D006241 7.7e-11 70.9 71 59.2
CSS0036611 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006241 1.0e-10 70.5 79 58.2
MELO3C017558.2 Cucumis melo HOM05D000104 ORTHO05D006241 1.0e-10 70.5 77 59.7
Thecc.01G037200 Theobroma cacao HOM05D000104 ORTHO05D006241 1.3e-10 70.1 76 61.8
BcaB02g09994 Brassica carinata HOM05D000104 ORTHO05D006241 1.7e-10 69.7 74 63.5
GSVIVG01018979001 Vitis vinifera HOM05D000104 ORTHO05D006241 1.7e-10 69.7 81 58.0
Cpa.g.sc55.93 Carica papaya HOM05D000104 ORTHO05D006241 2.2e-10 69.3 79 54.4
Cfa004299 Carpinus fangiana HOM05D000104 ORTHO05D006241 2.2e-10 69.3 88 54.5
Dinv39973 Davidia involucrata HOM05D000682 ORTHO05D006241 2.2e-10 69.3 77 58.4
Manes.01G134600 Manihot esculenta HOM05D000104 ORTHO05D006241 2.2e-10 69.3 77 59.7
vmacro01888 Vaccinium macrocarpon HOM05D000104 ORTHO05D006241 2.2e-10 69.3 77 61.0
vmacro01889 Vaccinium macrocarpon HOM05D000104 ORTHO05D006241 2.2e-10 69.3 77 61.0
CiPaw.01G036800 Carya illinoinensis HOM05D000104 ORTHO05D006241 2.9e-10 68.9 79 58.2
C09p11600 Brassica napus HOM05D000104 ORTHO05D006241 3.8e-10 68.6 77 59.7
MD15G1264100 Malus domestica HOM05D000104 ORTHO05D006241 3.8e-10 68.6 75 61.3
Glyma.01G175300 Glycine max HOM05D000104 ORTHO05D006241 5.0e-10 68.2 71 59.2
Oeu044136.1 Olea europaea HOM05D000104 ORTHO05D006241 5.0e-10 68.2 81 54.3
Potri.007G026700 Populus trichocarpa HOM05D000104 ORTHO05D006241 5.0e-10 68.2 79 58.2
Thhalv10003684m.g Eutrema salsugineum HOM05D000104 ORTHO05D006241 6.5e-10 67.8 77 57.1
Manes.02G092800 Manihot esculenta HOM05D000104 ORTHO05D006241 6.5e-10 67.8 77 59.7
Nitab4.5_0000434g0120 Nicotiana tabacum HOM05D000104 ORTHO05D006241 6.5e-10 67.8 71 59.2
Duzib147G0357 Durio zibethinus HOM05D000104 ORTHO05D006241 8.5e-10 67.4 74 60.8
Os09g0442700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006241 8.5e-10 67.4 81 56.8
BcaC04g23157 Brassica carinata HOM05D000104 ORTHO05D006241 1.1e-09 67.0 77 58.4
BolC9t54052H Brassica oleracea HOM05D000104 ORTHO05D006241 1.1e-09 67.0 77 58.4
PGR119G0582 Punica granatum HOM05D000104 ORTHO05D006241 1.1e-09 67.0 69 60.9
AUR62003161 Chenopodium quinoa HOM05D000104 ORTHO05D006241 1.4e-09 66.6 80 53.8
Gohir.A12G065100 Gossypium hirsutum HOM05D000104 ORTHO05D006241 1.4e-09 66.6 66 62.1
MD02G1149400 Malus domestica HOM05D000104 ORTHO05D006241 1.4e-09 66.6 75 60.0
Nitab4.5_0004711g0010 Nicotiana tabacum HOM05D000104 ORTHO05D006241 1.4e-09 66.6 71 57.7
Sp2g29930 Schrenkiella parvula HOM05D000104 ORTHO05D006241 1.4e-09 66.6 77 58.4
HPP92_024928 Vanilla planifolia HOM05D000104 ORTHO05D006241 1.4e-09 66.6 77 54.5
HPP92_024942 Vanilla planifolia HOM05D000104 ORTHO05D006241 1.4e-09 66.6 77 54.5
Atru.chr3.558 Acer truncatum HOM05D000682 ORTHO05D006241 1.9e-09 66.2 77 59.7
BcaB04g20104 Brassica carinata HOM05D000104 ORTHO05D006241 1.9e-09 66.2 74 62.2
Haze_15102 Corylus avellana HOM05D000104 ORTHO05D006241 1.9e-09 66.2 79 58.2
PGSC0003DMG400014895 Solanum tuberosum HOM05D000104 ORTHO05D006241 1.9e-09 66.2 81 50.6
PSO210G5504 Papaver somniferum HOM05D000104 ORTHO05D006241 4.2e-09 65.1 77 61.0
Sabra07G0023400 Salix brachista HOM05D000104 ORTHO05D006241 4.2e-09 65.1 79 55.7
vmacro17844 Vaccinium macrocarpon HOM05D000104 ORTHO05D006241 4.2e-09 65.1 79 59.5
Lalb_Chr09g0322481 Lupinus albus HOM05D000104 ORTHO05D006241 5.5e-09 64.7 81 50.6
BraA09t36627Z Brassica rapa HOM05D000104 ORTHO05D006241 7.2e-09 64.3 77 57.1
CANSAT01G0026 Cannabis sativa HOM05D000104 ORTHO05D006241 7.2e-09 64.3 77 59.7
ClCG07G009110 Citrullus lanatus HOM05D000104 ORTHO05D006241 7.2e-09 64.3 77 55.8
HanXRQChr07g0192851 Helianthus annuus HOM05D000104 ORTHO05D006241 7.2e-09 64.3 77 54.5
TWI73G0548 Tripterygium wilfordii HOM05D000104 ORTHO05D006241 7.2e-09 64.3 64 64.1
Prupe.7G153400 Prunus persica HOM05D000104 ORTHO05D006241 1.2e-08 63.5 76 59.2
CARHR280950 Cardamine hirsuta HOM05D000104 ORTHO05D006241 1.6e-08 63.2 77 55.8
Nitab4.5_0000136g0450 Nicotiana tabacum HOM05D000104 ORTHO05D006241 1.6e-08 63.2 97 48.5
Sed0015545 Sechium edule HOM05D000104 ORTHO05D006241 1.6e-08 63.2 77 54.5
QL06p045767 Quercus lobata HOM05D000104 ORTHO05D006241 2.1e-08 62.8 79 54.4
AL8G44720 Arabidopsis lyrata HOM05D000104 ORTHO05D006241 2.7e-08 62.4 79 53.2
CsaV3_4G005100 Cucumis sativus L. HOM05D000104 ORTHO05D006241 2.7e-08 62.4 75 53.3
FAN28G2553 Fragaria x ananassa HOM05D000104 ORTHO05D006241 2.7e-08 62.4 74 59.5
Lsat_1_v5_gn_2_76200 Lactuca sativa HOM05D000104 ORTHO05D006241 2.7e-08 62.4 77 53.2
A09p09800 Brassica napus HOM05D000104 ORTHO05D006241 3.6e-08 62.0 74 60.8
COL.COLO4_22093 Corchorus olitorius HOM05D000104 ORTHO05D006241 3.6e-08 62.0 75 56.0
FvH4_1g13430 Fragaria vesca HOM05D000104 ORTHO05D006241 3.6e-08 62.0 74 58.1
FAN19G2747 Fragaria x ananassa HOM05D000104 ORTHO05D006241 3.6e-08 62.0 74 58.1
SHI22928 Sapria himalayana HOM05D000104 ORTHO05D006241 3.6e-08 62.0 64 62.5
MSTRG.15275 Avicennia marina HOM05D000104 ORTHO05D006241 4.7e-08 61.6 63 60.3
CDE06G0270 Ceratophyllum demersum HOM05D000104 ORTHO05D006241 4.7e-08 61.6 69 56.5
FAN23G2807 Fragaria x ananassa HOM05D000104 ORTHO05D006241 6.1e-08 61.2 74 59.5
SGA_v2.0_scaffold248G44899 Striga asiatica HOM05D000104 ORTHO05D006241 6.1e-08 61.2 77 53.2
THA.LOC104826939 Tarenaya hassleriana HOM05D000104 ORTHO05D006241 6.1e-08 61.2 80 57.5
Peaxi162Scf00515g00516 Petunia axillaris HOM05D000104 ORTHO05D006241 7.9e-08 60.8 72 54.2
Solyc02g085390.4 Solanum lycopersicum HOM05D000104 ORTHO05D006241 1.0e-07 60.5 72 55.6
RcHm_v2.0_Chr2g0101811 Rosa chinensis HOM05D000104 ORTHO05D006241 1.8e-07 59.7 65 63.1
FAN26G2391 Fragaria x ananassa HOM05D000104 ORTHO05D006241 3.0e-07 58.9 74 58.1
PSO731G0017 Papaver somniferum HOM05D000104 ORTHO05D006241 3.0e-07 58.9 58 65.5
Sopen02g030080 Solanum pennellii HOM05D000104 ORTHO05D006241 3.0e-07 58.9 72 54.2
Zm00001eb055640 Zea mays HOM05D000104 ORTHO05D006241 5.1e-07 58.2 76 53.9
MBI16_g31217_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006241 1.1e-06 57.0 77 54.5
Peaxi162Scf00008g03717 Petunia axillaris HOM05D000104 ORTHO05D006241 1.1e-06 57.0 81 49.4
Carub.0008s2774 Capsella rubella HOM05D000104 ORTHO05D006241 1.5e-06 56.6 78 52.6
BcaC06g34741 Brassica carinata HOM05D000104 ORTHO05D006241 2.0e-06 56.2 54 66.7
C07p25040 Brassica napus HOM05D000104 ORTHO05D006241 2.0e-06 56.2 54 66.7
BolC7t43036H Brassica oleracea HOM05D000104 ORTHO05D006241 2.0e-06 56.2 54 66.7
AT5G66750 Arabidopsis thaliana HOM05D000104 ORTHO05D006241 2.6e-06 55.8 79 50.6
Oeu024883.1 Olea europaea HOM05D000104 ORTHO05D006241 4.4e-06 55.1 72 54.2
AUR62007981 Chenopodium quinoa HOM05D000104 ORTHO05D006241 7.4e-06 54.3 51 60.8


User provided reference genes

Program Settings