Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1458.4 739 100.0
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1323.5 741 89.1
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1307.0 741 87.6
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 741 86.9
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 740 87.0
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 741 87.2
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 740 87.0
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 741 87.2
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 742 87.2
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 742 87.2
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 741 86.5
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 741 86.6
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 741 86.4
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1295.4 742 86.4
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1291.2 739 86.7
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1291.2 741 85.8
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 742 86.7
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 739 86.5
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1288.1 741 85.6
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 743 86.7
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 741 85.3
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 738 86.6
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 741 85.7
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 741 86.2
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 741 85.4
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 739 86.1
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 741 86.0
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 741 86.0
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 741 85.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 741 86.0
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 741 86.4
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 741 85.8
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 743 85.5
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 741 85.2
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1278.8 741 85.7
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 741 85.8
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 741 85.6
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 741 85.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1278.1 741 85.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1277.7 741 85.6
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 741 85.7
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1276.9 741 85.4
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1276.9 740 84.6
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 741 85.4
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 747 84.6
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1275.0 742 85.8
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1273.8 743 85.3
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 741 85.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 741 85.0
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1272.3 741 85.3
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1271.1 744 85.5
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1270.8 744 85.5
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1270.8 741 85.4
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1270.0 741 85.0
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 741 84.5
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 741 85.0
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 741 85.0
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 740 84.3
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 741 85.3
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1266.9 740 85.4
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1266.9 768 82.6
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1266.5 743 84.5
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1265.8 739 84.3
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1264.6 740 85.1
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1264.6 741 84.9
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1264.2 740 84.3
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1261.5 741 84.5
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1261.1 741 84.5
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 763 83.0
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 763 83.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 745 83.9
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 741 84.8
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1259.6 741 84.8
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 741 84.1
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 740 83.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 740 84.1
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1253.4 743 83.7
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1253.4 744 84.9
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1252.7 711 87.9
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1252.3 742 83.7
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1252.3 707 87.4
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1251.9 741 83.5
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1251.1 742 84.0
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 740 83.4
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1249.6 742 83.6
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1249.2 740 83.4
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1248.8 740 83.2
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1248.0 740 83.2
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1248.0 740 83.1
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1248.0 744 83.9
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1247.3 741 83.3
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1246.9 743 83.4
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1246.5 741 83.0
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1245.3 743 84.0
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1245.0 822 77.6
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1244.2 741 83.3
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1244.2 737 83.9
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 745 83.8
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1242.3 743 83.0
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1241.5 735 84.2
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1239.2 710 87.6
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1238.4 743 82.2
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1238.4 741 82.7
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1236.5 803 78.5
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1233.8 747 82.1
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1231.1 740 82.6
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1229.2 747 83.0
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1222.6 736 82.5
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1219.5 738 82.8
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1218.0 705 85.2
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1217.6 719 84.4
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1214.9 757 80.2
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1203.3 772 78.8
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1196.8 736 81.7
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1185.2 737 82.0
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1176.0 668 87.3
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1168.3 747 78.0
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1156.4 674 85.2
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1151.7 747 79.0
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1129.4 736 76.6
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1118.2 688 79.7
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1115.5 630 87.6
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1109.0 616 88.0
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1097.0 744 73.4
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1081.2 701 75.2
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 8.5e-310 1066.6 712 73.9
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.1e-296 1023.1 635 79.7
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.5e-242 843.2 667 62.7
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.8e-235 819.7 696 61.4
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.1e-219 767.3 538 75.3
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 2.7e-215 752.7 646 61.0
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 1.8e-203 713.4 453 79.7
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.0e-202 709.9 523 71.1
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 2.6e-197 693.0 464 76.5
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.3e-196 688.3 741 53.2
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 9.1e-195 684.5 739 52.9
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 5.4e-131 472.6 263 87.8
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.6e-127 461.1 433 59.4
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.9e-91 341.3 218 79.4
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.6e-82 311.6 578 37.7
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 1.2e-72 278.9 151 88.7
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 2.8e-71 274.2 143 92.3
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.0e-57 227.3 170 70.0
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.7e-39 168.7 294 36.4
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 3.7e-39 167.5 84 92.9
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.6e-37 160.6 98 79.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.5e-35 155.6 80 91.2
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.9e-28 131.0 80 78.8
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 5.1e-28 130.6 72 84.7
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 4.4e-24 117.5 70 84.3
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 2.2e-23 115.2 71 77.5
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.7e-20 105.5 69 71.0
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 4.3e-19 100.9 108 52.8
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 1.3e-18 99.4 85 57.6
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 4.0e-17 94.4 222 33.8
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 9.0e-17 93.2 73 67.1
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 9.0e-17 93.2 85 55.3
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 5.8e-16 90.5 67 65.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.9e-15 87.4 67 62.7
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 2.1e-13 82.0 71 69.0
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 6.0e-13 80.5 61 63.9
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 7.9e-13 80.1 69 58.0
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 8.7e-12 76.6 47 78.7
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 8.7e-12 76.6 47 78.7
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.5e-11 75.1 46 78.3
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.3e-11 74.7 45 80.0
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 8.1e-10 70.1 41 80.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.8e-09 68.9 43 67.4
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 2.0e-08 65.5 144 32.6
ATR0561G078 Amborella trichopoda HOM05D004298 ORTHO05D065354 1.7e-07 62.4 69 46.4
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 2.9e-07 61.6 33 87.9


User provided reference genes

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