Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.6e-177 625.9 305 100.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.5e-140 501.9 313 79.2
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.0e-131 473.8 359 69.6
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.4e-128 463.4 313 72.5
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 5.2e-120 434.9 312 68.3
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-117 427.2 319 70.8
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-115 419.1 320 69.7
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 8.3e-110 401.0 294 65.3
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.8e-109 399.8 294 65.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.7e-107 393.3 302 65.2
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 4.7e-105 385.2 300 61.3
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 4.0e-104 382.1 320 60.9
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 2.0e-103 379.8 310 61.3
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.0e-103 379.8 314 59.6
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 4.4e-103 378.6 322 60.6
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.3e-102 377.1 310 60.6
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 2.9e-102 375.9 307 60.6
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.4e-101 373.6 263 68.4
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 5.4e-101 371.7 310 62.6
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 7.0e-101 371.3 310 60.0
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-100 370.5 298 63.8
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.2e-100 370.5 298 63.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.7e-100 369.4 284 63.0
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.7e-100 369.4 280 64.6
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 3.5e-100 369.0 314 59.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 4.6e-100 368.6 300 60.0
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.3e-99 367.1 310 57.1
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 2.3e-99 366.3 298 60.1
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 3.0e-99 365.9 314 60.8
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 3.9e-99 365.5 263 67.7
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.9e-99 365.5 260 64.2
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 3.9e-99 365.5 310 59.7
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 6.6e-99 364.8 308 59.1
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 8.6e-99 364.4 263 68.1
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.1e-98 364.0 355 54.1
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.9e-98 363.2 298 64.1
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.9e-98 363.2 305 58.0
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 2.5e-98 362.8 301 56.8
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 3.3e-98 362.5 316 60.1
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 3.3e-98 362.5 316 60.1
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 5.6e-98 361.7 317 59.3
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 7.3e-98 361.3 317 59.3
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 7.3e-98 361.3 309 56.0
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 9.5e-98 360.9 263 66.5
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 9.5e-98 360.9 314 60.2
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.2e-97 360.5 311 56.9
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.6e-97 360.1 249 66.3
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.8e-97 359.4 310 59.0
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 4.7e-97 358.6 263 66.5
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 8.1e-97 357.8 302 59.6
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 8.1e-97 357.8 310 58.4
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.0e-96 355.5 269 63.2
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 8.9e-96 354.4 236 70.3
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 8.9e-96 354.4 311 56.9
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 8.9e-96 354.4 311 56.9
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.0e-95 353.2 309 57.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.6e-95 352.8 260 63.8
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.6e-95 352.8 260 63.8
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 9.8e-95 350.9 295 61.4
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.7e-94 350.1 318 53.8
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 2.2e-94 349.7 301 59.5
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.9e-94 349.4 283 61.1
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 3.7e-94 349.0 312 57.7
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 8.3e-94 347.8 290 59.7
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 8.3e-94 347.8 311 58.5
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.9e-93 346.7 297 59.3
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.2e-93 345.9 313 55.6
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 9.2e-93 344.4 310 55.2
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.6e-92 343.6 317 54.3
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.1e-92 343.2 312 56.7
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 4.6e-92 342.0 317 56.2
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 6.0e-92 341.7 330 53.0
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.0e-91 340.9 312 57.7
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.7e-91 340.1 311 57.6
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 5.1e-91 338.6 309 53.7
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 6.6e-91 338.2 260 61.9
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.6e-91 338.2 299 58.9
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.5e-90 337.0 261 61.3
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.5e-90 336.3 305 54.4
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 4.3e-90 335.5 288 55.9
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.6e-89 333.6 312 57.1
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.6e-89 333.6 308 56.5
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.1e-89 333.2 301 53.2
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 2.8e-89 332.8 301 57.5
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 3.6e-89 332.4 305 55.1
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 8.1e-89 331.3 285 55.1
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 8.1e-89 331.3 285 55.1
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.1e-88 330.9 301 53.8
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.8e-88 330.1 285 62.1
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 2.3e-88 329.7 303 50.8
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 5.2e-88 328.6 285 57.5
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.5e-87 327.0 303 53.1
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 5.8e-87 325.1 306 51.0
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.7e-86 323.6 241 65.1
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.9e-86 322.8 299 54.8
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 4.9e-86 322.0 358 48.6
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.1e-85 318.9 309 53.1
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 4.1e-85 318.9 258 57.4
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.1e-84 316.6 290 53.1
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.7e-84 316.2 298 54.7
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 2.7e-84 316.2 312 51.0
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.3e-83 313.9 308 51.9
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 2.3e-83 313.2 281 53.4
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 6.6e-83 311.6 211 69.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.6e-81 307.0 216 68.5
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.6e-81 305.8 238 61.8
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.5e-79 300.4 315 52.7
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 6.4e-78 295.0 238 55.5
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 2.5e-74 283.1 400 45.8
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 8.1e-73 278.1 211 64.5
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 7.4e-66 255.0 206 67.0
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 2.0e-63 246.9 314 47.5
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 7.9e-60 235.0 247 52.6
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-58 231.1 290 48.6
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 4.3e-58 229.2 219 48.9
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.6e-58 228.8 240 52.9
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 7.4e-58 228.4 254 53.9
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 5.8e-55 218.8 367 37.9
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 7.6e-55 218.4 249 42.6
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 2.9e-54 216.5 243 50.6
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 7.9e-52 208.4 219 51.6
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 2.3e-51 206.8 307 37.5
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 4.8e-49 199.1 232 43.5
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.8e-48 197.2 190 58.9
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.3e-43 181.0 187 55.1
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 1.8e-43 180.6 244 38.5
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.8e-41 172.6 187 51.3
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.1e-40 171.4 309 38.5
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.6e-36 157.5 201 40.3
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 5.1e-35 152.5 112 67.9
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.7e-33 147.5 205 42.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 6.9e-32 142.1 121 55.4
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 3.8e-30 136.3 157 51.6
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 3.3e-26 123.2 283 31.8
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 5.7e-26 122.5 136 41.9
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.8e-17 93.6 90 56.7
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 4.1e-16 89.7 185 29.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 7.0e-16 89.0 196 26.0
EL10Ac7g16208 Beta vulgaris HOM05D046570 ORTHO05D006400 2.9e-14 83.6 117 49.6
EL10Ac7g16202 Beta vulgaris HOM05D046570 ORTHO05D006400 3.8e-14 83.2 115 47.8
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 9.1e-08 62.0 43 65.1
CARHR258970 Cardamine hirsuta HOM05D005396 ORTHO05D006400 7.7e-07 58.9 81 40.7
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 8.6e-06 55.5 73 37.0


User provided reference genes

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