Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.5e-164 580.9 289 100.0
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.0e-162 576.6 289 99.3
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.2e-153 546.6 273 99.3
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.3e-152 543.1 288 93.1
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.9e-151 539.3 288 91.7
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.4e-151 537.7 288 91.7
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.4e-151 537.7 288 91.7
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 4.3e-148 528.1 288 87.8
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.4e-146 523.1 288 87.2
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 6.8e-146 520.8 288 87.2
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 1.5e-145 519.6 288 86.5
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 3.4e-145 518.5 288 86.5
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 4.4e-145 518.1 288 85.8
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 5.8e-145 517.7 288 85.8
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 5.8e-145 517.7 288 86.1
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 5.8e-145 517.7 288 86.1
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 9.8e-145 516.9 288 85.1
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.3e-144 516.5 288 86.1
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.3e-144 516.5 288 85.4
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 2.2e-144 515.8 288 85.4
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 2.2e-144 515.8 288 85.1
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.9e-144 515.4 288 87.2
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 3.7e-144 515.0 288 86.5
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 3.7e-144 515.0 288 85.4
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 4.9e-144 514.6 288 84.0
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 6.4e-144 514.2 288 85.8
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 6.4e-144 514.2 288 85.8
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 6.4e-144 514.2 288 84.7
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 6.4e-144 514.2 288 84.7
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 6.4e-144 514.2 288 85.8
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 1.1e-143 513.5 288 83.7
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 1.1e-143 513.5 286 85.7
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 2.4e-143 512.3 285 85.3
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 3.2e-143 511.9 288 84.7
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 3.2e-143 511.9 288 84.7
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.2e-143 511.9 296 83.8
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 4.1e-143 511.5 288 85.8
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 4.1e-143 511.5 282 86.9
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 5.4e-143 511.1 288 85.1
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 5.4e-143 511.1 288 85.1
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 5.4e-143 511.1 288 85.8
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 5.4e-143 511.1 287 84.7
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 7.0e-143 510.8 287 85.7
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 7.0e-143 510.8 288 85.1
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 7.0e-143 510.8 287 84.3
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 9.2e-143 510.4 288 84.7
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 9.2e-143 510.4 288 84.7
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 9.2e-143 510.4 288 84.4
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 9.2e-143 510.4 288 84.7
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.2e-142 510.0 286 84.6
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.2e-142 510.0 288 84.7
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.6e-142 509.6 288 85.1
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 1.6e-142 509.6 288 83.7
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 1.6e-142 509.6 288 85.1
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.6e-142 509.6 288 85.1
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.1e-142 509.2 288 85.4
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 2.7e-142 508.8 289 84.1
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 2.7e-142 508.8 288 85.1
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 2.7e-142 508.8 288 85.1
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.7e-142 508.8 288 84.4
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 3.5e-142 508.4 286 84.3
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.5e-142 508.4 287 84.7
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 4.6e-142 508.1 288 85.8
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 4.6e-142 508.1 288 83.3
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 4.6e-142 508.1 288 83.7
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 4.6e-142 508.1 288 84.4
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.0e-142 507.7 288 85.1
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 6.0e-142 507.7 286 84.6
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.0e-141 506.9 288 85.4
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.7e-141 506.1 286 85.7
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 1.7e-141 506.1 288 84.0
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.7e-141 506.1 276 86.6
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 2.3e-141 505.8 288 85.4
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 3.0e-141 505.4 288 83.7
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 3.9e-141 505.0 309 80.9
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 5.1e-141 504.6 295 81.7
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 5.1e-141 504.6 289 84.1
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 5.1e-141 504.6 282 86.5
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.1e-140 503.4 288 83.3
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.9e-140 502.7 288 83.3
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.5e-140 502.3 316 78.2
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 3.3e-140 501.9 288 83.3
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 4.3e-140 501.5 273 89.0
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 5.6e-140 501.1 286 85.0
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 5.6e-140 501.1 288 83.3
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 7.3e-140 500.7 287 83.6
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.2e-139 500.0 286 85.0
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 2.1e-139 499.2 288 83.7
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 4.0e-138 495.0 289 83.0
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 1.5e-137 493.0 289 82.7
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.5e-137 493.0 287 84.7
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 3.4e-137 491.9 272 86.0
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 4.4e-137 491.5 292 81.8
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 3.7e-136 488.4 270 87.0
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 4.9e-136 488.0 276 85.9
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.3e-136 487.3 288 83.0
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.1e-135 486.9 288 81.2
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 3.2e-135 485.3 288 81.9
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 3.2e-135 485.3 272 86.0
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.1e-135 485.0 286 82.9
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 7.1e-135 484.2 288 81.6
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 9.2e-135 483.8 288 81.2
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 1.2e-134 483.4 293 80.9
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 1.2e-134 483.4 286 82.2
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.7e-134 482.3 272 85.7
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.7e-134 482.3 283 82.7
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 6.0e-134 481.1 360 68.6
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 7.8e-134 480.7 270 84.8
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 3.0e-133 478.8 274 84.3
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 5.1e-133 478.0 280 83.2
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.9e-132 476.1 259 87.6
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.3e-132 475.3 297 78.8
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 9.5e-132 473.8 288 80.2
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.8e-131 472.2 295 79.3
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.8e-131 472.2 295 79.3
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.6e-131 471.9 309 76.7
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 4.4e-129 464.9 272 84.6
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 4.4e-129 464.9 273 83.2
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 5.8e-129 464.5 290 79.3
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 6.4e-128 461.1 282 81.2
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 7.1e-127 457.6 284 78.9
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 7.1e-127 457.6 255 87.1
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.1e-126 456.1 253 86.2
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 2.3e-125 452.6 268 80.6
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.0e-125 452.2 253 85.0
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 3.9e-125 451.8 324 70.1
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 8.7e-125 450.7 283 76.3
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.1e-123 446.0 288 75.7
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 3.6e-123 445.3 288 76.4
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 9.0e-122 440.7 254 84.6
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 4.4e-121 438.3 238 88.7
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 7.6e-121 437.6 283 71.7
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 9.9e-121 437.2 246 85.4
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.3e-120 436.8 311 71.7
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 6.0e-118 427.9 242 85.1
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 4.3e-116 421.8 288 74.0
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 4.2e-111 405.2 287 67.9
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.7e-110 402.5 391 56.8
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 3.3e-108 395.6 217 86.6
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 5.3e-106 388.3 275 72.4
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 6.0e-94 348.2 191 84.8
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 3.0e-93 345.9 400 50.8
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 3.9e-93 345.5 198 82.8
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-92 343.6 273 65.6
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 2.6e-89 332.8 173 91.3
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-85 320.1 271 63.1
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.2e-81 307.4 278 59.0
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-74 282.3 169 78.7
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 2.6e-73 279.6 234 63.2
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 6.7e-69 265.0 261 49.4
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.8e-67 258.8 194 69.6
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 2.7e-49 199.9 133 74.4
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 2.7e-49 199.9 133 74.4
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 2.7e-49 199.9 193 58.5
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 6.4e-35 152.1 142 58.5
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.1e-30 137.1 131 58.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.5e-23 114.4 91 61.5
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 5.6e-23 112.5 72 66.7
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 9.5e-23 111.7 100 60.0
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 6.8e-21 105.5 88 62.5
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.8e-21 105.5 88 62.5
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 1.3e-19 101.3 65 72.3
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 8.6e-16 88.6 48 81.2
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 2.8e-14 83.6 46 84.8
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.7e-11 74.3 45 73.3
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 2.2e-11 73.9 90 53.3
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 2.2e-11 73.9 90 53.3
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.3e-08 64.7 40 77.5
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 1.9e-07 60.8 45 60.0


User provided reference genes

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