Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 1.6e-263 912.1 450 100.0
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 4.4e-208 728.0 472 76.9
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 5.5e-203 711.1 472 74.6
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.6e-202 709.5 472 74.6
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 3.1e-190 668.7 472 70.3
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 2.3e-172 609.4 476 64.3
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 6.2e-170 601.3 472 64.8
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 9.2e-166 587.4 477 62.7
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 9.5e-163 577.4 475 60.4
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.8e-162 575.9 472 61.4
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 4.7e-162 575.1 473 61.3
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 1.8e-161 573.2 476 61.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 3.1e-161 572.4 471 62.0
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 6.8e-161 571.2 471 61.4
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.2e-160 570.5 475 61.5
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.5e-160 570.1 477 59.7
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 1.3e-159 567.0 477 58.9
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 1.3e-159 567.0 474 60.3
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.7e-159 566.6 472 60.8
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 2.9e-159 565.8 478 60.7
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 4.9e-159 565.1 487 57.7
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 6.4e-159 564.7 491 58.0
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 6.4e-159 564.7 477 60.0
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.1e-158 563.9 477 61.2
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 2.4e-158 562.8 475 59.8
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 3.2e-158 562.4 475 61.5
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 3.2e-158 562.4 472 60.6
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 4.2e-158 562.0 480 60.6
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 5.4e-158 561.6 477 62.1
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 9.2e-158 560.8 487 59.5
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 2.1e-157 559.7 473 59.4
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 2.7e-157 559.3 473 59.8
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 3.5e-157 558.9 473 59.8
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 4.6e-157 558.5 473 59.2
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 6.0e-157 558.1 473 58.1
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 1.7e-156 556.6 482 59.3
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 8.7e-156 554.3 436 61.7
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.5e-155 553.5 480 60.6
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 5.6e-155 551.6 483 59.4
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 7.3e-155 551.2 473 60.3
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 2.1e-154 549.7 470 59.8
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 3.6e-154 548.9 470 59.6
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 4.7e-154 548.5 469 60.1
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.8e-153 546.6 467 58.0
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 2.4e-153 546.2 485 60.4
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 4.0e-153 545.4 478 59.0
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 5.3e-153 545.0 481 58.8
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 6.9e-153 544.7 470 58.3
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 1.2e-152 543.9 483 58.6
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 3.4e-152 542.3 472 57.6
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 4.4e-152 542.0 480 58.3
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 9.9e-152 540.8 485 57.5
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 1.3e-151 540.4 483 57.8
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 1.3e-151 540.4 448 60.0
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 2.2e-151 539.7 475 58.3
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 3.8e-151 538.9 483 57.8
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 3.8e-151 538.9 483 57.8
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 3.8e-151 538.9 472 58.1
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 4.9e-151 538.5 481 57.8
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 2.4e-150 536.2 486 57.6
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 4.2e-150 535.4 472 57.6
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 4.2e-150 535.4 470 57.9
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 7.1e-150 534.6 485 57.1
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 7.1e-150 534.6 473 57.7
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 9.3e-150 534.3 485 57.3
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 1.6e-149 533.5 479 57.6
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.5e-149 532.3 475 57.5
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 4.6e-149 531.9 448 59.2
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.3e-148 530.4 485 56.7
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.3e-148 530.4 475 57.3
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.7e-148 530.0 485 56.7
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 3.9e-148 528.9 483 56.9
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 1.5e-147 526.9 472 56.1
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 9.9e-144 514.2 473 56.0
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 1.7e-143 513.5 450 56.4
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 1.1e-142 510.8 472 55.1
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 2.7e-141 506.1 424 60.1
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 6.0e-141 505.0 496 55.2
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.8e-137 493.4 474 55.3
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 4.5e-136 488.8 423 57.7
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 3.0e-132 476.1 442 57.5
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.7e-122 442.6 374 58.8
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 2.3e-116 423.3 385 54.0
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 3.9e-116 422.5 459 49.2
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 3.1e-113 412.9 381 55.6
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 1.2e-109 401.0 338 59.8
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 3.9e-108 396.0 319 63.3
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 2.0e-107 393.7 418 46.9
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 3.0e-100 369.8 467 42.4
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 5.2e-100 369.0 316 57.9
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 8.5e-95 351.7 432 44.7
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.5e-86 324.3 251 61.0
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 1.8e-84 317.4 384 43.0
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 4.4e-83 312.8 388 41.5
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.7e-83 312.4 257 61.9
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 7.5e-83 312.0 252 62.3
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 3.8e-79 299.7 438 39.3
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 5.7e-75 285.8 399 40.4
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 4.9e-74 282.7 362 45.0
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 1.8e-73 280.8 447 38.5
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 5.4e-73 279.3 255 58.0
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.3e-66 258.1 283 49.8
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 7.8e-64 248.8 242 54.5
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 3.0e-63 246.9 208 57.7
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.6e-61 241.1 319 46.4
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 1.1e-60 238.4 239 51.0
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 4.1e-57 226.5 174 60.9
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 2.3e-55 220.7 202 57.4
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 4.9e-50 203.0 187 57.2
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 2.1e-40 171.0 236 44.5
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 4.6e-40 169.9 116 70.7
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 1.1e-30 138.7 126 55.6
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 2.4e-28 131.0 118 58.5
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 1.6e-21 108.2 100 53.0
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 4.2e-17 93.6 91 53.8
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 6.0e-16 89.7 95 50.5
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 2.7e-08 64.3 173 31.2
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 3.0e-07 60.8 175 30.3
Actinidia26749 Actinidia chinensis HOM05D006543 ORTHO05D008308 7.4e-06 56.2 78 41.0


User provided reference genes

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