Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 0.0e+00 1860.9 958 100.0
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 0.0e+00 1335.9 956 72.9
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 8.8e-283 977.2 955 55.3
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 7.0e-280 967.6 957 55.2
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 7.0e-280 967.6 954 55.9
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 3.5e-279 965.3 959 54.0
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 2.9e-278 962.2 962 53.8
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 9.4e-277 957.2 968 54.6
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.0e-275 953.7 952 53.5
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 2.0e-274 949.5 959 53.9
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 3.4e-274 948.7 964 54.6
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 7.5e-274 947.6 956 53.1
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 9.8e-274 947.2 960 54.2
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 1.7e-273 946.4 957 53.4
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.1e-272 943.7 959 53.9
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 9.1e-272 940.6 949 53.1
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.2e-271 940.3 954 53.6
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.9e-269 932.9 972 52.6
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 4.2e-269 931.8 937 53.6
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 8.0e-268 927.5 956 54.1
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.0e-267 927.2 962 52.7
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 3.4e-266 922.2 950 52.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.6e-263 913.3 954 53.0
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 1.0e-262 910.6 929 54.7
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.3e-262 910.2 960 53.6
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 3.6e-260 902.1 976 51.2
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 4.0e-259 898.7 946 51.9
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 3.4e-258 895.6 941 52.2
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 4.4e-258 895.2 950 51.3
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.7e-257 893.3 964 50.2
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-257 892.9 996 50.0
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.3e-257 891.0 978 50.5
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 7.0e-256 887.9 961 51.8
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 6.0e-255 884.8 955 51.4
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.3e-254 883.6 956 51.5
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 3.9e-254 882.1 950 51.5
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 2.5e-253 879.4 946 51.2
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 4.7e-252 875.2 959 50.8
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.6e-250 869.4 948 51.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.4e-250 869.0 948 51.5
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 4.4e-250 868.6 945 51.2
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 4.4e-250 868.6 946 51.2
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.3e-249 867.1 925 52.8
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 2.2e-249 866.3 963 50.4
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.7e-249 865.5 962 51.2
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 6.4e-249 864.8 666 69.2
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.1e-248 864.0 942 50.4
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 4.1e-248 862.1 940 51.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.1e-247 859.8 942 50.3
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 2.1e-247 859.8 947 50.6
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 2.1e-247 859.8 942 51.1
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 3.9e-246 855.5 947 50.5
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 8.6e-246 854.4 653 68.9
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.1e-245 854.0 958 50.9
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.9e-245 853.2 958 49.4
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.1e-244 849.7 1035 47.5
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.8e-244 849.4 957 50.1
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.8e-243 846.7 984 48.5
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 3.1e-243 845.9 942 50.6
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.5e-242 843.6 956 49.6
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.3e-241 840.5 955 49.9
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 6.4e-241 838.2 951 50.1
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 3.1e-235 819.3 951 49.3
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 6.8e-235 818.1 945 48.3
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 7.6e-234 814.7 996 47.0
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 3.8e-233 812.4 952 49.1
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.5e-231 805.8 944 49.2
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 8.7e-230 801.2 951 48.3
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.0e-222 777.7 933 47.8
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.6e-215 753.8 953 44.6
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.1e-215 753.4 868 49.5
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 9.6e-213 744.6 946 45.8
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 6.2e-212 741.9 951 45.4
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 6.9e-211 738.4 991 45.2
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 3.4e-210 736.1 971 45.6
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 4.5e-210 735.7 975 45.5
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 5.8e-210 735.3 970 46.1
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.6e-210 734.9 817 52.0
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.9e-209 733.0 956 46.3
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 4.9e-209 732.3 831 49.1
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.1e-208 731.1 944 46.4
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.9e-206 722.6 969 45.0
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 5.1e-206 722.2 998 45.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 6.7e-206 721.8 862 47.7
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 5.3e-203 712.2 807 50.4
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 7.6e-202 708.4 962 45.3
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 9.3e-200 701.4 674 55.6
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.8e-190 670.6 960 43.0
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 8.8e-190 668.3 941 43.5
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 2.5e-189 666.8 810 48.4
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.4e-182 644.4 946 41.2
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.3e-182 643.7 978 41.8
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 3.7e-180 636.3 969 42.3
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-179 634.8 891 44.3
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.1e-179 633.3 730 49.7
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 9.1e-179 631.7 970 42.3
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 4.5e-178 629.4 892 44.1
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.3e-177 627.9 974 42.0
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.2e-175 621.3 732 48.5
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.7e-172 610.9 1029 38.8
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.7e-172 609.8 569 56.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.4e-171 607.8 569 56.8
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.7e-167 593.6 883 42.1
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.7e-161 574.3 862 40.4
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.7e-156 557.8 866 41.3
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 7.2e-152 542.3 631 48.5
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.9e-146 522.7 891 38.6
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.2e-139 500.4 779 41.8
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 3.7e-132 476.9 826 38.5
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 4.3e-128 463.4 852 36.0
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.6e-127 461.5 1039 32.5
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 3.7e-124 450.3 992 32.9
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 7.8e-122 442.6 776 37.5
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 6.2e-119 433.0 947 34.0
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.4e-115 421.8 666 41.7
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 4.2e-115 420.2 666 41.7
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.2e-114 418.7 836 36.1
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.7e-114 417.5 480 49.0
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-109 401.7 713 37.6
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.9e-109 399.1 561 43.5
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-105 389.0 525 44.0
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 3.9e-105 387.1 716 37.3
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 7.3e-104 382.9 258 73.3
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.0e-94 350.5 608 38.3
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.3e-92 345.5 344 54.7
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.2e-92 344.7 260 67.3
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.3e-89 335.5 599 37.9
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 3.6e-74 284.3 559 35.8
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 4.5e-69 267.3 1170 24.9
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.5e-68 263.5 347 46.1
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 7.4e-56 223.4 370 39.5
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-55 222.6 558 32.1
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 6.3e-55 220.3 346 39.6
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 9.4e-51 206.5 265 44.2
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-48 199.5 208 51.0
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 1.5e-48 199.1 142 67.6
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 7.0e-46 190.3 199 51.8
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.5e-43 182.6 283 36.0
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 1.0e-41 176.4 189 49.2
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 2.6e-40 171.8 139 64.0
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 5.7e-40 170.6 223 45.7
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.7e-31 142.5 305 32.5
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 5.0e-28 131.0 141 51.1
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 8.0e-26 123.6 435 29.4
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 2.6e-24 118.6 114 56.1
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.7e-23 115.9 122 50.8
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 4.9e-23 114.4 208 35.6
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 4.6e-21 107.8 279 29.4
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 1.9e-19 102.4 82 63.4
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 4.3e-19 101.3 149 44.3
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 1.2e-18 99.8 180 33.9
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 8.9e-17 93.6 92 56.5
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.7e-13 82.0 63 60.3
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-12 79.7 146 37.7
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.7e-12 79.3 105 44.8
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 4.3e-11 74.7 156 35.9
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 4.0e-09 68.2 54 57.4
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 8.9e-09 67.0 156 34.0
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 2.9e-07 62.0 51 60.8


User provided reference genes

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