Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.2e-91 339.0 175 100.0
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.6e-57 226.5 356 42.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 5.0e-51 204.9 433 37.0
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.5e-51 204.5 406 37.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.1e-45 187.2 369 35.2
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 7.0e-45 184.5 362 35.6
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.2e-42 175.3 414 32.4
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 4.2e-42 175.3 384 34.4
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 6.1e-41 171.4 414 31.9
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.4e-40 170.2 414 32.6
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.4e-40 170.2 414 32.9
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.4e-40 170.2 414 32.6
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.3e-40 169.5 414 32.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.3e-40 169.5 414 31.6
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 4.0e-40 168.7 416 32.5
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 5.2e-40 168.3 411 32.4
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 8.9e-40 167.5 414 31.9
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 8.9e-40 167.5 414 31.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 8.9e-40 167.5 414 32.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.2e-39 167.2 414 32.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.5e-39 166.8 414 31.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.0e-39 166.4 414 31.9
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.0e-39 166.4 414 31.4
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.4e-39 165.6 414 31.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.4e-39 165.2 414 31.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 4.4e-39 165.2 414 32.1
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 9.8e-39 164.1 411 31.6
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 9.8e-39 164.1 414 31.4
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.7e-38 163.3 414 31.6
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.7e-38 163.3 414 31.6
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.7e-38 163.3 414 31.6
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.7e-38 163.3 414 31.2
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 2.2e-38 162.9 414 31.4
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.7e-38 162.2 409 31.5
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.7e-38 162.2 413 31.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.4e-38 161.4 414 31.2
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.1e-37 160.6 414 31.2
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.8e-37 159.8 409 30.3
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.8e-37 159.8 413 31.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.4e-37 159.5 413 31.0
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.4e-37 159.5 414 30.9
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.4e-37 159.5 445 30.3
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 9.2e-37 157.5 414 30.9
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 9.2e-37 157.5 414 30.9
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 9.2e-37 157.5 414 30.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.2e-37 157.5 414 30.7
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 9.2e-37 157.5 413 31.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.2e-36 157.1 414 30.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.2e-36 157.1 413 29.8
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.2e-36 157.1 411 30.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.2e-36 157.1 414 30.4
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.6e-36 156.8 410 31.5
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.0e-36 156.4 414 30.7
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 3.5e-36 155.6 414 30.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 3.5e-36 155.6 414 30.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 3.5e-36 155.6 414 30.7
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 7.8e-36 154.5 414 30.2
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 7.8e-36 154.5 414 31.2
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 7.8e-36 154.5 408 30.6
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.0e-35 154.1 414 30.2
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.3e-35 153.7 409 30.8
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-35 153.3 414 30.0
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.3e-35 152.9 411 30.2
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.3e-35 152.9 411 30.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 2.3e-35 152.9 406 29.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 2.9e-35 152.5 415 29.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.9e-35 152.1 416 31.5
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 6.6e-35 151.4 411 30.9
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 6.6e-35 151.4 415 29.4
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 8.6e-35 151.0 413 30.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.1e-34 150.6 414 30.0
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.5e-34 150.2 415 30.4
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.5e-34 149.4 414 30.0
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.3e-34 149.1 414 30.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 4.3e-34 148.7 420 29.3
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.6e-33 146.7 412 30.1
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 2.1e-33 146.4 426 29.6
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 2.1e-33 146.4 426 29.6
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.1e-33 146.4 420 30.0
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.8e-33 146.0 387 30.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.8e-33 146.0 414 29.5
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 2.8e-33 146.0 414 29.2
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 3.6e-33 145.6 426 29.3
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.6e-33 145.6 108 67.6
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.0e-32 144.1 79 88.6
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.8e-32 143.3 414 29.2
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.3e-32 142.9 79 88.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.3e-32 142.9 414 29.0
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-32 142.1 416 28.8
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 6.8e-32 141.4 418 28.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 6.8e-32 141.4 79 86.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 6.8e-32 141.4 413 28.6
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 6.8e-32 141.4 415 28.2
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-31 140.2 79 87.3
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-31 140.2 79 87.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.5e-31 140.2 76 88.2
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.4e-31 139.0 413 28.3
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.4e-31 138.7 79 84.8
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 4.4e-31 138.7 410 28.3
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 7.5e-31 137.9 76 85.5
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.2e-30 136.3 76 84.2
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 6.4e-30 134.8 413 27.4
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.4e-29 131.7 71 90.1
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-28 129.8 79 78.5
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.6e-28 128.6 114 59.6
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.3e-27 126.3 114 58.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.3e-27 126.3 100 65.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 6.6e-27 124.8 114 57.9
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 6.6e-27 124.8 75 77.3
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-26 124.0 205 42.0
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 7.3e-26 121.3 114 54.4
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.6e-25 120.2 71 81.7
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 6.2e-25 118.2 71 77.5
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.4e-24 117.1 114 54.4
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 6.8e-24 114.8 74 70.3
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.5e-23 113.6 74 67.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.5e-23 113.6 129 46.5
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.9e-22 108.6 108 50.9
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.4e-21 105.1 110 49.1
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.0e-20 101.7 82 61.0
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-19 100.5 115 50.4
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 3.0e-19 99.4 99 53.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.5e-18 96.3 51 90.2
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.5e-18 94.4 75 62.7
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.7e-17 92.0 79 57.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 2.6e-15 86.3 51 80.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.4e-13 80.5 107 43.9
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.4e-13 78.6 50 74.0
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 9.2e-13 77.8 132 37.1
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.3e-10 69.3 72 40.3
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 4.7e-09 65.5 38 81.6
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.8e-08 63.5 86 40.7
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 4.9e-06 55.5 38 68.4


User provided reference genes

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