Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g081440 Amaranthus hybridus HOM05D000207 ORTHO05D004956 7.2e-36 153.3 73 100.0
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 9.8e-09 63.2 37 73.0
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 1.7e-08 62.4 36 77.8
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
CAN.G274.30 Capsicum annuum HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 1.7e-08 62.4 36 77.8
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 2.2e-08 62.0 36 75.0
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 2.2e-08 62.0 36 75.0
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 2.2e-08 62.0 36 75.0
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 2.2e-08 62.0 36 75.0
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 2.2e-08 62.0 36 75.0
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.2e-08 62.0 36 75.0
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 2.2e-08 62.0 36 75.0
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 72.2
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 72.2
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 75.0
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 75.0
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 72.2
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 72.2
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 72.2
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 75.0
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 72.2
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 72.2
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 2.9e-08 61.6 36 75.0
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 3.7e-08 61.2 36 75.0
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 3.7e-08 61.2 36 75.0
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 3.7e-08 61.2 37 73.0
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.7e-08 61.2 36 72.2
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.7e-08 61.2 36 72.2
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.7e-08 61.2 36 72.2
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 3.7e-08 61.2 36 72.2
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 3.7e-08 61.2 36 72.2
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 3.7e-08 61.2 36 72.2
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 3.7e-08 61.2 36 75.0
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 3.7e-08 61.2 36 75.0
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 75.0
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 75.0
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 75.0
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 75.0
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 72.2
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 75.0
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 75.0
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 4.9e-08 60.8 36 75.0
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
A09p67600 Brassica napus HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 69.4
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 75.0
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 72.2
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 6.4e-08 60.5 36 75.0
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 72.2
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 72.2
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 72.2
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 72.2
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 72.2
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 72.2
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 72.2
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 8.3e-08 60.1 36 69.4
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.1e-07 59.7 39 66.7
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 1.1e-07 59.7 36 72.2
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 1.1e-07 59.7 36 72.2
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 1.1e-07 59.7 36 72.2
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.1e-07 59.7 36 72.2
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.1e-07 59.7 36 72.2
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.4e-07 59.3 36 69.4
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 1.4e-07 59.3 36 69.4
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 1.4e-07 59.3 36 72.2
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 72.2
CDE02G4280 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 72.2
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 72.2
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 72.2
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 72.2
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 69.4
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 2.4e-07 58.5 36 69.4
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 2.4e-07 58.5 36 69.4
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 2.4e-07 58.5 36 69.4
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.4e-07 58.5 36 69.4
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.4e-07 58.5 36 69.4
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 2.4e-07 58.5 36 69.4
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 2.4e-07 58.5 36 72.2
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 2.4e-07 58.5 36 69.4
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 2.4e-07 58.5 37 64.9
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 2.4e-07 58.5 36 69.4
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 2.4e-07 58.5 36 69.4
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 3.2e-07 58.2 36 69.4
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 4.1e-07 57.8 36 69.4
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 4.1e-07 57.8 36 72.2
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 4.1e-07 57.8 37 75.7
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 4.1e-07 57.8 36 66.7
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 4.1e-07 57.8 36 66.7
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 5.4e-07 57.4 36 72.2
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 5.4e-07 57.4 36 66.7
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 5.4e-07 57.4 36 66.7
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 7.0e-07 57.0 36 69.4
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 7.0e-07 57.0 36 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 9.2e-07 56.6 36 66.7
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 9.2e-07 56.6 36 66.7
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 9.2e-07 56.6 36 66.7
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 9.2e-07 56.6 36 66.7
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 1.6e-06 55.8 36 63.9
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 1.6e-06 55.8 36 63.9
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 61.1
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 69.4
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 63.9
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 61.1
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 61.1
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 61.1
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 61.1
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 2.7e-06 55.1 36 61.1
Pp3c25_1640 Physcomitrium patens HOM05D000207 ORTHO05D004956 3.5e-06 54.7 36 63.9
vmacro16885 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.5e-06 54.7 35 68.6


User provided reference genes

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