Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g062200 Amaranthus hybridus HOM05D000590 ORTHO05D005739 0.0e+00 1083.2 531 100.0
EL10Ac5g11624 Beta vulgaris HOM05D000590 ORTHO05D005739 1.8e-181 639.8 613 59.1
Hund15143 Selenicereus undatus HOM05D000590 ORTHO05D005739 9.5e-178 627.5 570 60.0
Hund10609 Selenicereus undatus HOM05D000590 ORTHO05D005739 1.5e-143 513.8 611 48.8
Sc07g0007210 Simmondsia chinensis HOM05D000590 ORTHO05D005739 4.6e-124 449.1 735 40.1
Prupe.1G177800 Prunus persica HOM05D000590 ORTHO05D005739 1.1e-104 384.8 707 38.8
Dinv44239 Davidia involucrata HOM05D000590 ORTHO05D005739 2.2e-102 377.1 692 36.6
Cfa008549 Carpinus fangiana HOM05D000590 ORTHO05D005739 3.8e-102 376.3 694 37.8
Thecc.04G180700 Theobroma cacao HOM05D000590 ORTHO05D005739 5.5e-101 372.5 633 39.2
QL10p044299 Quercus lobata HOM05D000590 ORTHO05D005739 7.2e-101 372.1 709 36.8
RcHm_v2.0_Chr4g0409981 Rosa chinensis HOM05D000590 ORTHO05D005739 2.1e-100 370.5 691 38.2
TAR362G0932 Trochodendron aralioides HOM05D000590 ORTHO05D005739 7.9e-100 368.6 713 36.2
CsaV3_6G003090 Cucumis sativus L. HOM05D000590 ORTHO05D005739 2.3e-99 367.1 705 35.7
ClCG08G003700 Citrullus lanatus HOM05D000590 ORTHO05D005739 7.4e-98 362.1 697 35.6
CiPaw.01G108600 Carya illinoinensis HOM05D000590 ORTHO05D005739 1.3e-97 361.3 694 37.6
MD04G1028600 Malus domestica HOM05D000590 ORTHO05D005739 4.8e-97 359.4 468 46.6
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 8.2e-97 358.6 692 36.3
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 1.4e-96 357.8 688 35.9
MELO3C026117.2 Cucumis melo HOM05D000590 ORTHO05D005739 2.4e-96 357.1 726 35.1
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 9.1e-96 355.1 684 36.1
GSVIVG01013555001 Vitis vinifera HOM05D000590 ORTHO05D005739 2.0e-95 354.0 691 35.3
Sed0020632 Sechium edule HOM05D000590 ORTHO05D005739 2.6e-95 353.6 726 34.4
Manes.04G059300 Manihot esculenta HOM05D000590 ORTHO05D005739 9.4e-93 345.1 729 34.6
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 6.1e-92 342.4 679 35.2
Atru.chr3.1727 Acer truncatum HOM05D000590 ORTHO05D005739 3.0e-91 340.1 682 36.5
Potri.014G146300 Populus trichocarpa HOM05D000590 ORTHO05D005739 6.7e-91 339.0 715 34.0
Potri.002G232800 Populus trichocarpa HOM05D000590 ORTHO05D005739 1.2e-90 338.2 690 34.9
THA.LOC104800910 Tarenaya hassleriana HOM05D000590 ORTHO05D005739 1.5e-90 337.8 702 35.2
FAN07G2789 Fragaria x ananassa HOM05D000590 ORTHO05D005739 5.7e-90 335.9 692 37.7
Hma1.2p1_0412F.1_g147170 Hydrangea macrophylla HOM05D000590 ORTHO05D005739 1.1e-88 331.6 709 34.1
FAN22G1397 Fragaria x ananassa HOM05D000590 ORTHO05D005739 1.8e-88 330.9 695 37.7
Actinidia32949 Actinidia chinensis HOM05D000590 ORTHO05D005739 4.1e-88 329.7 736 32.9
Thhalv10016217m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 2.0e-87 327.4 523 40.7
FAN17G1987 Fragaria x ananassa HOM05D000590 ORTHO05D005739 2.0e-87 327.4 692 37.1
Ciclev10018602m.g Citrus clementina HOM05D000590 ORTHO05D005739 3.5e-87 326.6 711 33.9
Cc00_g10020 Coffea canephora HOM05D000590 ORTHO05D005739 1.9e-85 320.9 679 33.3
Haze_11082 Corylus avellana HOM05D000590 ORTHO05D005739 1.2e-84 318.2 744 34.0
TWI63G0312 Tripterygium wilfordii HOM05D000590 ORTHO05D005739 8.8e-83 312.0 689 34.3
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 1.5e-82 311.2 685 33.6
HanXRQChr13g0390161 Helianthus annuus HOM05D000590 ORTHO05D005739 4.4e-82 309.7 689 35.0
DCAR_023890 Daucus carota HOM05D000590 ORTHO05D005739 9.8e-82 308.5 673 33.0
Psat3g189880 Pisum sativum HOM05D000590 ORTHO05D005739 1.3e-81 308.1 693 34.8
PSO017G6033 Papaver somniferum HOM05D000590 ORTHO05D005739 3.7e-81 306.6 679 33.0
Cpa.g.sc50.132 Carica papaya HOM05D000590 ORTHO05D005739 8.3e-81 305.4 427 44.3
PSO675G4267 Papaver somniferum HOM05D000590 ORTHO05D005739 3.1e-80 303.5 682 33.7
Lsat_1_v5_gn_5_63200 Lactuca sativa HOM05D000590 ORTHO05D005739 1.2e-79 301.6 703 32.9
Medtr7g021365 Medicago truncatula HOM05D000590 ORTHO05D005739 2.0e-79 300.8 671 34.6
ECA233G2054 Erigeron canadensis HOM05D000590 ORTHO05D005739 2.7e-79 300.4 706 33.1
Actinidia35907 Actinidia chinensis HOM05D000590 ORTHO05D005739 1.0e-78 298.5 731 32.3
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 1.3e-78 298.1 669 33.3
CDE08G0067 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 1.3e-78 298.1 552 35.7
Glyma.18G282700 Glycine max HOM05D000590 ORTHO05D005739 1.3e-78 298.1 685 34.9
Nitab4.5_0001687g0070 Nicotiana tabacum HOM05D000590 ORTHO05D005739 5.0e-78 296.2 544 36.2
Eucgr.H00451 Eucalyptus grandis HOM05D000590 ORTHO05D005739 6.5e-78 295.8 548 35.9
TPR.G2958 Trifolium pratense HOM05D000590 ORTHO05D005739 8.5e-78 295.4 678 32.6
Aqoxy2G04044 Aquilegia oxysepala HOM05D000590 ORTHO05D005739 1.5e-77 294.7 698 33.1
AT2G31650 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 3.2e-77 293.5 684 32.5
Phvul.008G018500 Phaseolus vulgaris HOM05D000590 ORTHO05D005739 4.2e-77 293.1 696 33.6
Dinv22651 Davidia involucrata HOM05D000590 ORTHO05D005739 5.5e-77 292.7 428 42.3
Lalb_Chr04g0258071 Lupinus albus HOM05D000590 ORTHO05D005739 2.1e-76 290.8 681 32.9
CARHR005360 Cardamine hirsuta HOM05D000590 ORTHO05D005739 3.6e-76 290.0 686 33.1
VMungo1383G1517 Vigna mungo HOM05D000590 ORTHO05D005739 3.6e-76 290.0 693 34.6
Carub.0004s1295 Capsella rubella HOM05D000590 ORTHO05D005739 6.1e-76 289.3 687 31.6
FvH4_4g12210 Fragaria vesca HOM05D000590 ORTHO05D005739 6.1e-76 289.3 469 39.4
Oeu029902.1 Olea europaea HOM05D000590 ORTHO05D005739 6.1e-76 289.3 604 33.3
unitig_578.g16517 Utricularia gibba HOM05D000590 ORTHO05D005739 1.0e-75 288.5 314 47.8
AL4G26890 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 8.8e-75 285.4 685 32.0
MSTRG.21982 Avicennia marina HOM05D000590 ORTHO05D005739 2.6e-74 283.9 691 33.0
Lalb_Chr17g0336461 Lupinus albus HOM05D000590 ORTHO05D005739 2.6e-74 283.9 684 32.9
Sp4g14050 Schrenkiella parvula HOM05D000590 ORTHO05D005739 5.7e-74 282.7 707 32.0
Glyma.08G258500 Glycine max HOM05D000590 ORTHO05D005739 7.5e-74 282.3 688 32.8
Aa31LG5G5330 Aethionema arabicum HOM05D000590 ORTHO05D005739 9.8e-74 282.0 689 32.2
Migut.N00443 Erythranthe guttata HOM05D000590 ORTHO05D005739 1.3e-73 281.6 706 31.7
Thhalv10006646m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 2.8e-73 280.4 716 32.7
Carub.0001s0518 Capsella rubella HOM05D000590 ORTHO05D005739 1.8e-72 277.7 720 32.9
arahy.Tifrunner.gnm1.ann1.631JZ3 Arachis hypogaea HOM05D000590 ORTHO05D005739 5.4e-72 276.2 737 32.4
arahy.Tifrunner.gnm1.ann1.NCWU1I Arachis hypogaea HOM05D000590 ORTHO05D005739 5.4e-72 276.2 737 32.4
ATR0824G108 Amborella trichopoda HOM05D000590 ORTHO05D005739 4.5e-71 273.1 703 31.3
Aa31LG1G8510 Aethionema arabicum HOM05D000590 ORTHO05D005739 7.8e-71 272.3 728 31.6
BcaB06g28533 Brassica carinata HOM05D000590 ORTHO05D005739 7.8e-71 272.3 634 33.1
C08p51570 Brassica napus HOM05D000590 ORTHO05D005739 5.0e-70 269.6 536 36.0
Sopen09g036190 Solanum pennellii HOM05D000590 ORTHO05D005739 6.6e-70 269.2 458 36.9
AT1G05830 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 1.9e-69 267.7 701 32.5
MBI11_g00125_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D005739 3.3e-69 266.9 720 30.8
AL1G15760 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 1.2e-68 265.0 689 32.8
DCAR_029931 Daucus carota HOM05D000590 ORTHO05D005739 1.6e-68 264.6 419 39.4
CAN.G710.42 Capsicum annuum HOM05D000590 ORTHO05D005739 2.1e-68 264.2 603 33.5
Lj1g0024416 Lotus japonicus HOM05D000590 ORTHO05D005739 3.0e-67 260.4 694 31.4
Sp1g04640 Schrenkiella parvula HOM05D000590 ORTHO05D005739 5.2e-67 259.6 682 31.1
BcaC07g42107 Brassica carinata HOM05D000590 ORTHO05D005739 2.0e-66 257.7 542 35.1
Ca_07101_v3 Cicer arietinum L. HOM05D000590 ORTHO05D005739 2.0e-66 257.7 650 32.5
A04p24160 Brassica napus HOM05D000590 ORTHO05D005739 3.4e-66 256.9 686 31.9
BraA04t17936Z Brassica rapa HOM05D000590 ORTHO05D005739 3.4e-66 256.9 686 31.9
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 1.3e-65 255.0 655 31.3
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 3.7e-65 253.4 550 34.0
A09p67280 Brassica napus HOM05D000590 ORTHO05D005739 1.8e-64 251.1 682 30.6
BolC8t52685H Brassica oleracea HOM05D000590 ORTHO05D005739 1.8e-64 251.1 548 33.4
C04p60890 Brassica napus HOM05D000590 ORTHO05D005739 4.1e-64 250.0 679 31.4
BolC4t27580H Brassica oleracea HOM05D000590 ORTHO05D005739 4.1e-64 250.0 680 31.0
Nitab4.5_0026039g0010 Nicotiana tabacum HOM05D000590 ORTHO05D005739 1.0e-62 245.4 294 46.3
Peaxi162Scf00286g00342 Petunia axillaris HOM05D000590 ORTHO05D005739 1.7e-62 244.6 530 34.3
Sabra02G0177600 Salix brachista HOM05D000590 ORTHO05D005739 1.1e-61 241.9 782 28.9
CARHR125280 Cardamine hirsuta HOM05D000590 ORTHO05D005739 1.9e-61 241.1 397 40.3
vmacro00564 Vaccinium macrocarpon HOM05D000590 ORTHO05D005739 1.0e-59 235.3 676 29.4
SHI33758 Sapria himalayana HOM05D000590 ORTHO05D005739 3.7e-57 226.9 333 41.1
Os09g0134500 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D005739 4.9e-57 226.5 540 32.0
Lj3C343G2 Lonicera japonica HOM05D000590 ORTHO05D005739 2.4e-56 224.2 396 36.1
HPP92_008119 Vanilla planifolia HOM05D000590 ORTHO05D005739 3.9e-54 216.9 448 32.4
Rhsim09G0037300 Rhododendron simsii HOM05D000590 ORTHO05D005739 3.1e-51 207.2 560 31.1
Solyc09g098260.3 Solanum lycopersicum HOM05D000590 ORTHO05D005739 6.8e-51 206.1 408 35.0
Pp3c16_18950 Physcomitrium patens HOM05D000590 ORTHO05D005739 3.4e-50 203.8 318 36.8
DCAR_029056 Daucus carota HOM05D000590 ORTHO05D005739 1.4e-48 198.4 244 45.5
SGA_v2.0_scaffold290G47293 Striga asiatica HOM05D000590 ORTHO05D005739 5.8e-42 176.4 369 35.8
MD13G1278800 Malus domestica HOM05D000590 ORTHO05D005739 8.4e-41 172.6 315 40.3
Mapoly0051s0016 Marchantia polymorpha HOM05D000590 ORTHO05D005739 1.0e-38 165.6 480 26.0
Pp3c6_7710 Physcomitrium patens HOM05D000590 ORTHO05D005739 1.7e-38 164.9 476 27.1
MD13G1279000 Malus domestica HOM05D000590 ORTHO05D005739 6.2e-36 156.4 398 31.2
AagrBONN_evm.TU.Sc2ySwM_344.772 Anthoceros agrestis HOM05D000590 ORTHO05D005739 6.9e-35 152.9 477 24.5
AUR62036478 Chenopodium quinoa HOM05D000590 ORTHO05D005739 1.3e-33 148.7 126 59.5
Pp3c5_20190 Physcomitrium patens HOM05D000590 ORTHO05D005739 1.7e-33 148.3 483 25.3
CBR_g9119 Chara braunii HOM05D000409 ORTHO05D000184 2.0e-26 124.8 241 32.0
SMO236G0090 Selaginella moellendorffii HOM05D000590 ORTHO05D005739 2.1e-23 114.8 215 34.4
Nitab4.5_0001526g0080 Nicotiana tabacum HOM05D000590 ORTHO05D005739 1.0e-22 112.5 97 56.7
Peaxi162Scf00286g00341 Petunia axillaris HOM05D000590 ORTHO05D005739 6.2e-20 103.2 109 50.5
Dinv22650 Davidia involucrata HOM05D000590 ORTHO05D005739 9.0e-19 99.4 110 45.5
SalBow6G2045 Salvia bowleyana HOM05D000590 ORTHO05D005739 1.2e-18 99.0 91 51.6
FAN12G2369 Fragaria x ananassa HOM05D000590 ORTHO05D005739 2.6e-18 97.8 89 51.7
FAN12G4006 Fragaria x ananassa HOM05D000590 ORTHO05D005739 2.6e-18 97.8 89 51.7
MD04G1028500 Malus domestica HOM05D000590 ORTHO05D005739 3.4e-18 97.4 109 45.9
CARHR125270 Cardamine hirsuta HOM05D000590 ORTHO05D005739 1.1e-16 92.4 103 44.7
AUR62037096 Chenopodium quinoa HOM05D000590 ORTHO05D005739 6.0e-15 86.7 41 85.4
DCAR_029033 Daucus carota HOM05D000590 ORTHO05D006311 2.3e-14 84.7 72 54.2
Cpa.g.sc50.131 Carica papaya HOM05D000590 ORTHO05D005739 5.3e-11 73.6 48 68.8
Nitab4.5_0002078g0020 Nicotiana tabacum HOM05D000590 ORTHO05D005739 1.5e-10 72.0 57 54.4
Thecc.02G302600 Theobroma cacao HOM05D000590 ORTHO05D005739 2.0e-10 71.6 188 34.6
SMO143G0053 Selaginella moellendorffii HOM05D000590 ORTHO05D005739 3.4e-10 70.9 95 36.8
DCAR_029053 Daucus carota HOM05D000590 ORTHO05D005739 4.5e-10 70.5 150 32.7
Zm00001eb312280 Zea mays HOM05D001061 ORTHO05D006808 4.9e-09 67.0 53 52.8
AL6G51170 Arabidopsis lyrata HOM05D001061 ORTHO05D006808 1.1e-08 65.9 122 32.8
CARHR249610 Cardamine hirsuta HOM05D001061 ORTHO05D006808 2.5e-08 64.7 127 31.5
Oeu013403.1 Olea europaea HOM05D000590 ORTHO05D005739 2.5e-08 64.7 98 36.7
Aqoxy3G00989 Aquilegia oxysepala HOM05D000590 ORTHO05D026704 4.2e-08 63.9 103 37.9
Aqoxy7G02430 Aquilegia oxysepala HOM05D000590 ORTHO05D026704 5.5e-08 63.5 102 37.3
BcaB01g02414 Brassica carinata HOM05D001061 ORTHO05D006808 7.1e-08 63.2 54 51.9
BcaC01g06778 Brassica carinata HOM05D001061 ORTHO05D006808 9.3e-08 62.8 93 33.3
C03p38100 Brassica napus HOM05D001061 ORTHO05D006808 9.3e-08 62.8 105 34.3
BolC3t16097H Brassica oleracea HOM05D001061 ORTHO05D006808 9.3e-08 62.8 105 34.3
Aa31LG5G1700 Aethionema arabicum HOM05D001061 ORTHO05D006808 1.2e-07 62.4 59 45.8
A03p31260 Brassica napus HOM05D001061 ORTHO05D006808 1.6e-07 62.0 104 31.7
Sc17g0000490 Simmondsia chinensis HOM05D001061 ORTHO05D006808 1.6e-07 62.0 75 42.7
Ah.11g049290 Amaranthus hybridus HOM05D001061 ORTHO05D006808 3.5e-07 60.8 100 37.0
BraA03t12306Z Brassica rapa HOM05D001061 ORTHO05D006808 3.5e-07 60.8 104 30.8
AT4G02070 Arabidopsis thaliana HOM05D001061 ORTHO05D006808 4.6e-07 60.5 124 31.5
Carub.0006s3516 Capsella rubella HOM05D001061 ORTHO05D006808 4.6e-07 60.5 128 31.2
Oeu038017.1 Olea europaea HOM05D001061 ORTHO05D006808 4.6e-07 60.5 89 33.7
COL.COLO4_10182 Corchorus olitorius HOM05D002786 ORTHO05D003493 1.0e-06 59.3 56 58.9
Os09g0407600 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D006808 1.0e-06 59.3 125 29.6
PSO063G5713 Papaver somniferum HOM05D003060 ORTHO05D001716 1.0e-06 59.3 188 22.9
Sp6g01950 Schrenkiella parvula HOM05D001061 ORTHO05D006808 1.0e-06 59.3 58 46.6
Sopen01g031290 Solanum pennellii HOM05D001061 ORTHO05D006808 1.0e-06 59.3 89 32.6
Glyma.19G216000 Glycine max HOM05D001061 ORTHO05D006808 1.3e-06 58.9 45 53.3
Lsat_1_v5_gn_8_165800 Lactuca sativa HOM05D001061 ORTHO05D006808 1.3e-06 58.9 69 40.6
Lalb_Chr15g0078211 Lupinus albus HOM05D001061 ORTHO05D006808 1.3e-06 58.9 61 45.9
Nn1g07815 Nelumbo nucifera HOM05D057241 ORTHO05D005739 1.3e-06 58.9 67 44.8
Solyc01g079520.3 Solanum lycopersicum HOM05D001061 ORTHO05D006808 1.3e-06 58.9 45 51.1
Thecc.07G194000 Theobroma cacao HOM05D000590 ORTHO05D005739 1.8e-06 58.5 210 31.4
PSO782G3873 Papaver somniferum HOM05D003060 ORTHO05D001716 3.0e-06 57.8 188 22.9
CAN.G777.8 Capsicum annuum HOM05D001061 ORTHO05D006808 3.9e-06 57.4 45 51.1
EL10As5g23522 Beta vulgaris HOM05D001061 ORTHO05D006808 5.1e-06 57.0 56 46.4
Oeu027165.1 Olea europaea HOM05D002054 ORTHO05D004936 5.1e-06 57.0 79 38.0
Hund09627 Selenicereus undatus HOM05D001061 ORTHO05D006808 5.1e-06 57.0 95 34.7
CBR_g41117 Chara braunii HOM05D001061 ORTHO05D006808 6.7e-06 56.6 97 34.0
DCAR_018314 Daucus carota HOM05D001061 ORTHO05D006808 6.7e-06 56.6 65 38.5
Lj1g0020273 Lotus japonicus HOM05D001061 ORTHO05D006808 6.7e-06 56.6 45 48.9
Oeu045173.1 Olea europaea HOM05D002054 ORTHO05D004936 6.7e-06 56.6 118 30.5
Rhsim10G0132800 Rhododendron simsii HOM05D000047 ORTHO05D000044 6.7e-06 56.6 94 37.2
Atru.chr10.2407 Acer truncatum HOM05D000555 ORTHO05D000646 8.7e-06 56.2 57 42.1
CDE02G2952 Ceratophyllum demersum HOM05D001061 ORTHO05D006808 8.7e-06 56.2 126 26.2
Migut.E01505 Erythranthe guttata HOM05D002054 ORTHO05D004936 8.7e-06 56.2 90 33.3
TPR.G4121 Trifolium pratense HOM05D001061 ORTHO05D006808 8.7e-06 56.2 45 44.4
VMungo1383G2073 Vigna mungo HOM05D001061 ORTHO05D006808 8.7e-06 56.2 45 48.9


User provided reference genes

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