Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.7e-132 473.8 234 100.0
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 7.6e-95 350.9 237 78.5
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 8.4e-94 347.4 200 86.0
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.0e-91 339.0 230 74.8
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.1e-90 337.0 232 77.6
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.5e-90 336.7 276 67.0
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.2e-89 333.6 230 73.5
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.1e-89 332.8 229 73.4
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 3.6e-89 332.0 208 77.9
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.4e-88 329.3 230 72.6
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 8.9e-88 327.4 234 72.2
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 8.9e-88 327.4 234 72.6
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.2e-87 327.0 237 72.6
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 1.2e-87 327.0 234 72.6
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.5e-87 326.6 222 73.9
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.5e-87 326.6 222 76.1
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 2.0e-87 326.2 234 71.8
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.0e-87 326.2 234 71.8
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 2.6e-87 325.9 234 72.2
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 3.4e-87 325.5 239 70.7
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 3.4e-87 325.5 191 83.2
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 3.4e-87 325.5 218 73.9
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.4e-87 325.1 187 85.6
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 4.9e-86 321.6 182 86.3
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 8.4e-86 320.9 180 85.6
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-85 320.5 221 73.8
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.1e-85 320.5 221 73.8
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.1e-85 320.5 210 77.1
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.9e-85 319.7 222 72.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.4e-85 319.3 222 74.3
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 3.2e-85 318.9 182 86.3
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 3.2e-85 318.9 182 85.7
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 5.4e-85 318.2 227 71.8
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 5.4e-85 318.2 222 74.3
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.4e-85 318.2 179 85.5
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 7.1e-85 317.8 211 74.4
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 9.3e-85 317.4 191 80.6
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 9.3e-85 317.4 236 69.5
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.2e-84 317.0 182 85.2
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.2e-84 317.0 214 75.2
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-84 316.6 221 72.4
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.6e-84 316.6 218 72.9
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.6e-84 316.6 221 71.0
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.1e-84 316.2 182 84.6
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.1e-84 316.2 182 84.6
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 4.6e-84 315.1 237 70.0
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 4.6e-84 315.1 224 70.5
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 6.0e-84 314.7 182 83.5
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.8e-84 314.3 186 80.6
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.0e-83 313.9 216 74.1
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.0e-83 313.9 200 77.0
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.0e-83 313.9 209 75.6
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.0e-83 313.9 182 82.4
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.0e-83 313.9 233 68.7
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.3e-83 313.5 221 72.4
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.3e-83 313.5 216 73.6
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-83 313.5 177 83.1
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.3e-83 313.5 226 70.4
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.7e-83 313.2 182 84.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.7e-83 313.2 172 84.9
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.7e-83 313.2 177 83.1
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.7e-83 313.2 187 79.7
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 2.3e-83 312.8 222 73.0
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.3e-83 312.8 181 82.9
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.3e-83 312.8 223 69.5
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.3e-83 312.8 222 69.8
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 3.0e-83 312.4 221 72.4
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 3.0e-83 312.4 221 71.5
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 3.9e-83 312.0 236 68.6
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 3.9e-83 312.0 226 69.9
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 3.9e-83 312.0 182 81.9
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.1e-83 311.6 177 82.5
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 5.1e-83 311.6 178 83.7
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 6.6e-83 311.2 222 71.2
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 6.6e-83 311.2 180 83.3
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.1e-82 310.5 188 78.7
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.5e-82 310.1 188 78.7
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.5e-82 310.1 219 70.8
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.5e-82 310.1 194 76.3
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 1.9e-82 309.7 182 82.4
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 1.9e-82 309.7 178 83.1
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 2.5e-82 309.3 196 77.0
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.5e-82 309.3 162 88.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.5e-82 309.3 165 89.1
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 3.3e-82 308.9 217 70.5
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.3e-82 308.9 196 78.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 4.3e-82 308.5 225 71.1
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 5.6e-82 308.1 181 81.2
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 5.6e-82 308.1 222 73.9
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 5.6e-82 308.1 222 73.9
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 5.6e-82 308.1 193 76.2
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 7.3e-82 307.8 233 67.8
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 9.6e-82 307.4 225 72.9
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.3e-81 307.0 180 82.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.3e-81 307.0 234 67.1
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.6e-81 306.6 182 81.9
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.6e-81 306.6 181 80.7
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 2.8e-81 305.8 161 88.8
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.8e-80 303.1 157 89.8
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 6.9e-80 301.2 174 81.6
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 9.0e-80 300.8 238 67.2
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.2e-79 300.4 221 69.2
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.0e-79 299.7 189 78.8
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 6.4e-78 294.7 158 86.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 6.4e-78 294.7 201 71.1
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 8.4e-78 294.3 193 74.6
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.4e-77 292.7 182 75.3
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 3.2e-77 292.4 182 75.3
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.1e-76 289.7 158 84.8
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 2.5e-74 282.7 227 66.1
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 7.4e-74 281.2 161 83.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.1e-72 277.3 180 71.1
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.2e-71 273.9 216 66.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 4.6e-68 261.9 173 70.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.5e-66 256.9 158 72.2
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 4.8e-65 251.9 209 63.2
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 6.2e-65 251.5 169 69.8
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.2e-63 247.3 222 60.4
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.4e-63 245.7 185 67.0
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 3.7e-57 225.7 120 89.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.1e-56 224.2 206 59.2
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.3e-51 206.5 174 62.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.0e-46 191.0 161 65.2
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 4.2e-45 185.7 120 73.3
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.2e-45 185.7 90 94.4
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.5e-42 177.2 110 78.2
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 1.8e-40 170.2 83 91.6
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 5.3e-40 168.7 83 90.4
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 2.2e-38 163.3 102 76.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 2.9e-38 162.9 102 75.5
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 6.3e-33 145.2 80 90.0
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.3e-32 142.1 109 69.7
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 2.9e-30 136.3 76 85.5
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.1e-29 134.4 156 39.7
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 3.2e-29 132.9 123 56.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 7.2e-29 131.7 73 89.0
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 6.3e-25 118.6 69 84.1
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 7.2e-21 105.1 80 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 4.1e-16 89.4 60 68.3
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.1e-16 89.4 49 85.7
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 3.8e-14 82.8 90 52.2
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 4.4e-10 69.3 102 39.2
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 5.7e-10 68.9 42 76.2
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 3.7e-09 66.2 47 63.8
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3


User provided reference genes

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