Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 0.0e+00 1169.5 593 100.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 6.3e-271 937.2 587 81.4
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 8.2e-271 936.8 589 81.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 5.5e-243 844.3 582 75.3
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.6e-229 799.7 599 69.9
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.4e-224 781.9 585 69.7
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-223 780.0 502 76.5
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-223 780.0 502 76.5
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.4e-222 776.5 585 67.7
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.1e-222 775.0 594 66.8
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.6e-218 761.9 582 67.9
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 6.1e-218 761.1 501 74.3
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.4e-217 760.0 590 66.8
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.3e-217 759.2 584 68.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.0e-217 758.8 505 74.3
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 3.0e-217 758.8 590 67.6
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 5.2e-217 758.1 586 67.2
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 3.4e-216 755.4 507 73.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 9.8e-216 753.8 501 74.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.7e-215 753.1 600 66.0
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-215 753.1 600 65.7
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 3.7e-215 751.9 507 72.8
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 3.7e-215 751.9 506 73.7
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.4e-214 750.0 597 66.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.8e-214 749.6 509 72.3
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.8e-214 749.6 585 66.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 7.0e-214 747.7 506 72.7
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 9.2e-214 747.3 503 73.6
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 9.2e-214 747.3 506 72.7
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 9.2e-214 747.3 507 74.0
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-213 746.9 510 72.7
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.6e-213 746.5 507 73.2
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 4.6e-213 745.0 511 73.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 5.9e-213 744.6 509 72.3
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 7.8e-213 744.2 597 64.7
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.0e-212 743.8 592 65.2
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 2.3e-212 742.7 509 71.9
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 3.0e-212 742.3 507 74.8
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 3.9e-212 741.9 598 65.1
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 8.6e-212 740.7 596 65.8
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 8.6e-212 740.7 502 73.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.5e-211 740.0 593 65.8
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.5e-211 740.0 535 69.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.5e-211 739.2 584 65.2
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 3.3e-211 738.8 584 65.9
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.2e-210 736.9 607 64.1
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.2e-210 736.9 501 73.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.6e-210 736.5 510 72.7
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.1e-210 736.1 597 64.3
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.1e-210 736.1 504 73.0
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 4.7e-210 734.9 585 65.6
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 6.2e-210 734.6 595 65.0
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 6.2e-210 734.6 548 68.2
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 8.0e-210 734.2 594 64.5
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.1e-209 733.8 588 65.5
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 5.2e-209 731.5 593 64.6
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 5.2e-209 731.5 598 64.0
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 6.8e-209 731.1 505 72.5
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 8.9e-209 730.7 593 64.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 8.9e-209 730.7 593 64.2
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 8.9e-209 730.7 501 72.5
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 9.8e-208 727.2 598 62.9
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 9.8e-208 727.2 557 67.9
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.3e-207 726.9 593 63.9
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 3.7e-207 725.3 599 64.6
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 3.7e-207 725.3 598 64.9
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 8.3e-207 724.2 597 64.5
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 8.3e-207 724.2 598 64.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 3.2e-206 722.2 567 65.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 5.4e-206 721.5 530 68.9
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.2e-206 720.7 594 64.3
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.6e-205 719.9 593 64.6
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.3e-204 716.8 590 63.1
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.0e-204 715.7 602 64.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.9e-204 715.3 526 67.9
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 6.6e-204 714.5 477 73.0
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.6e-204 714.1 591 63.6
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-203 713.8 513 69.6
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.3e-203 712.2 459 77.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.6e-202 709.9 599 63.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 6.8e-201 704.5 590 65.4
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.0e-197 691.4 620 60.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.1e-195 687.2 603 61.9
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 3.3e-195 685.6 593 62.4
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.2e-192 677.2 669 56.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.5e-192 676.8 510 67.8
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 4.4e-192 675.2 596 60.1
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.7e-191 673.3 511 67.1
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.2e-190 669.1 460 72.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 3.3e-187 659.1 599 59.9
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 9.6e-187 657.5 526 64.1
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.8e-185 653.3 586 59.9
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 4.0e-185 652.1 573 60.2
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.9e-182 643.3 650 56.8
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 3.0e-180 636.0 507 61.5
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 3.9e-180 635.6 607 55.5
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 8.4e-175 617.8 476 64.3
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.9e-174 616.7 651 53.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 5.4e-174 615.1 598 56.9
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.0e-172 610.9 514 59.5
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.5e-160 570.5 386 72.0
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 2.2e-159 566.6 441 65.5
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 2.9e-159 566.2 366 75.7
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.7e-156 554.7 475 58.1
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.1e-155 554.3 561 54.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.0e-148 531.2 523 53.9
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.9e-135 486.5 506 52.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 8.0e-133 478.4 596 46.6
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.6e-131 473.4 436 53.9
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.3e-130 471.1 507 50.7
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.8e-129 467.2 345 68.7
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 6.7e-124 448.7 436 51.6
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.1e-118 431.4 390 57.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 5.2e-116 422.5 502 48.8
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 5.7e-115 419.1 416 57.2
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.4e-113 413.7 378 61.9
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.6e-111 405.2 383 56.9
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 4.9e-106 389.4 487 43.7
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.6e-104 384.4 266 72.9
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-87 328.2 333 50.8
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 2.1e-85 320.9 204 73.0
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 7.6e-75 285.8 262 53.4
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.6e-75 285.8 229 65.1
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 4.3e-70 270.0 202 63.4
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.6e-69 268.1 173 72.8
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.0e-67 261.2 391 39.6
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.0e-63 247.3 277 49.8
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.6e-59 234.2 178 63.5
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 5.8e-59 233.0 174 69.0
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 3.5e-56 223.8 285 44.2
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.7e-55 219.2 129 80.6
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.3e-52 209.9 193 54.4
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.1e-49 202.2 128 75.0
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 3.9e-47 193.7 113 82.3
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.6e-45 188.3 206 53.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 4.0e-44 183.7 277 41.9
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 9.0e-44 182.6 177 56.5
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.1e-33 149.1 269 36.4
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.8e-31 141.7 122 57.4
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.8e-31 141.7 106 65.1
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.9e-26 124.4 123 52.0
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 5.0e-26 123.6 273 32.6
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.2e-24 119.0 112 54.5
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 7.9e-24 116.3 91 63.7
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.9e-24 116.3 234 38.9
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 7.4e-22 109.8 88 60.2
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 8.2e-21 106.3 88 61.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.3e-18 99.0 56 83.9
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.9e-18 97.8 91 51.6
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.2e-17 94.0 92 50.0
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 5.5e-17 93.6 57 77.2
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 7.2e-17 93.2 71 64.8
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-15 89.4 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.7e-15 86.7 54 75.9
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 8.8e-15 86.3 244 27.0
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.8e-12 78.6 268 25.4
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.2e-08 65.9 68 51.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-07 62.8 36 83.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 3.0e-07 61.2 105 33.3
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.8e-07 59.7 40 72.5


User provided reference genes

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