Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.8e-221 772.3 398 100.0
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.4e-178 629.8 385 84.7
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.9e-178 629.4 366 87.7
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 9.3e-178 627.1 380 85.0
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.5e-169 598.6 360 83.6
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 4.9e-163 578.2 360 81.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.6e-158 563.1 387 77.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 7.7e-156 554.3 364 78.6
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.0e-155 553.9 349 80.5
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 2.2e-155 552.7 346 80.9
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 2.2e-155 552.7 368 77.2
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.0e-155 551.6 367 77.9
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.1e-154 550.4 357 79.6
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.4e-154 550.1 356 79.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.4e-154 550.1 347 80.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 3.2e-154 548.9 332 84.0
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.2e-154 548.5 344 82.0
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 7.2e-154 547.7 333 81.7
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 7.2e-154 547.7 327 85.0
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.6e-153 545.4 332 82.2
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 6.1e-153 544.7 334 82.0
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 7.9e-153 544.3 332 82.8
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.9e-152 542.0 360 78.3
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 8.8e-152 540.8 330 83.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.1e-151 540.4 337 82.2
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.5e-151 540.0 352 77.6
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.3e-151 538.5 350 78.0
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-151 538.5 346 78.3
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-151 538.5 346 78.3
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 9.7e-151 537.3 395 71.9
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 9.7e-151 537.3 341 79.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 9.7e-151 537.3 371 74.9
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.7e-150 536.6 341 79.2
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.2e-150 536.2 328 82.9
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.2e-150 536.2 385 72.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.2e-150 536.2 371 74.7
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.7e-150 535.4 349 77.9
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 4.8e-150 535.0 369 75.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 6.3e-150 534.6 348 78.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 6.3e-150 534.6 355 77.2
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 8.2e-150 534.3 329 82.7
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-149 533.9 348 79.0
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.4e-149 533.5 323 83.0
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-149 533.1 348 78.7
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.4e-149 532.7 325 82.5
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 3.1e-149 532.3 323 83.3
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.1e-149 532.3 372 74.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 5.3e-149 531.6 342 78.4
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 5.3e-149 531.6 374 73.5
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 6.9e-149 531.2 325 82.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.2e-148 530.4 332 81.0
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-148 530.4 332 81.3
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.2e-148 530.4 350 78.3
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.5e-148 530.0 353 78.2
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.6e-148 529.3 352 78.4
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 3.4e-148 528.9 348 77.6
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.0e-147 527.3 343 78.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.0e-147 527.3 327 81.7
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.0e-147 527.3 333 79.6
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.0e-147 527.3 366 74.3
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.3e-147 526.9 339 79.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.7e-147 526.6 330 80.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.2e-147 526.2 325 82.5
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 2.2e-147 526.2 327 81.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 5.0e-147 525.0 388 70.4
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.0e-147 525.0 333 80.2
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 6.5e-147 524.6 332 81.0
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.1e-146 523.9 348 77.9
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.1e-146 523.9 325 80.6
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.9e-146 523.1 349 77.9
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.2e-146 522.3 318 83.6
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.2e-146 522.3 332 80.1
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.2e-146 521.9 332 80.1
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 5.5e-146 521.5 333 79.6
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 7.2e-146 521.2 353 75.6
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.2e-146 521.2 326 81.3
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 7.2e-146 521.2 325 80.3
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 9.4e-146 520.8 333 79.0
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.6e-145 520.0 355 76.1
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.1e-145 519.6 332 78.9
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.6e-145 518.8 332 78.3
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.6e-145 518.8 332 80.7
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-144 516.9 348 77.0
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.4e-144 516.9 348 77.3
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.4e-144 516.9 348 77.0
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.3e-144 516.2 349 76.5
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 5.1e-144 515.0 347 77.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-143 513.8 373 72.4
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.1e-143 513.8 348 76.1
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.1e-143 513.8 349 76.8
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.5e-143 513.5 344 76.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 3.3e-143 512.3 354 75.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.3e-143 512.3 332 78.3
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.3e-143 512.3 332 78.3
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 3.3e-143 512.3 350 76.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 4.4e-143 511.9 348 75.9
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.4e-143 511.9 354 75.4
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 4.4e-143 511.9 338 77.8
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 4.4e-143 511.9 322 80.1
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 5.7e-143 511.5 323 80.5
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 5.7e-143 511.5 323 80.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.7e-143 511.5 401 68.3
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 7.4e-143 511.1 325 81.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.3e-142 510.4 348 74.1
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-142 510.0 348 75.9
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.7e-142 510.0 348 75.9
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.2e-142 509.6 333 78.7
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 2.2e-142 509.6 345 76.2
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.8e-142 508.4 348 75.6
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 4.8e-142 508.4 348 75.6
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 4.8e-142 508.4 368 71.2
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 8.2e-142 507.7 348 74.7
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.2e-142 507.7 327 79.2
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.4e-141 506.9 410 66.3
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.8e-141 506.5 348 74.1
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 2.4e-141 506.1 359 73.5
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 7.0e-141 504.6 348 74.7
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.0e-141 504.6 341 76.0
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.2e-140 503.8 396 67.9
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.5e-140 503.4 348 74.1
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.5e-140 503.4 336 78.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.5e-140 503.4 332 76.8
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-140 502.7 350 73.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.9e-140 501.5 341 75.4
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.2e-139 499.6 332 76.2
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.2e-139 499.6 437 63.2
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 5.5e-138 495.0 335 76.7
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.1e-137 493.0 332 76.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.1e-137 493.0 332 76.8
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.3e-135 485.7 300 80.0
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.7e-134 483.4 286 83.9
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.4e-133 480.3 286 82.5
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 4.1e-133 478.8 332 74.4
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 9.1e-133 477.6 298 82.9
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.7e-131 473.4 332 74.4
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 5.0e-131 471.9 333 73.0
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.5e-131 471.1 313 77.0
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-130 470.7 326 74.2
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 9.4e-130 467.6 348 71.0
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.6e-129 465.7 331 74.0
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.0e-128 464.2 312 75.6
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.3e-128 463.0 354 70.3
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 5.2e-128 461.8 325 73.5
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.7e-126 455.7 322 70.8
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.4e-125 453.8 325 71.4
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 9.1e-125 451.1 299 76.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 3.5e-124 449.1 301 75.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.4e-109 400.6 297 70.4
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.1e-104 382.9 254 79.5
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 9.8e-103 377.9 248 78.6
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.7e-102 377.1 307 63.2
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.2e-102 376.7 238 81.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 3.4e-95 352.8 290 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 4.7e-89 332.4 232 75.4
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 3.8e-78 296.2 271 61.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 9.9e-71 271.6 200 73.5
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.2e-69 266.5 317 50.8
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 9.3e-69 265.0 193 72.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.1e-61 238.8 370 43.5
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 2.2e-46 190.7 112 80.4
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.3e-41 174.9 113 77.0
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 3.4e-39 166.8 171 59.1
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.4e-39 166.8 171 59.1
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.4e-39 166.8 171 59.1
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.5e-34 150.6 361 33.0
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 6.9e-32 142.5 101 69.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.6e-31 140.6 99 70.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 2.6e-31 140.6 99 70.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 7.7e-31 139.0 102 67.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.7e-30 137.9 99 69.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.5e-29 134.0 103 66.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.7e-28 130.6 104 63.5
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.1e-26 125.2 103 61.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 8.8e-19 99.0 64 75.0
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.4e-16 91.7 67 73.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.7e-15 87.4 102 49.0
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.7e-15 85.9 61 75.4
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.3e-06 58.5 35 71.4


User provided reference genes

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