Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 0.0e+00 1375.9 708 100.0
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 7.0e-285 983.8 623 83.6
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 9.3e-205 717.6 562 69.9
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 7.4e-202 708.0 452 81.0
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 8.4e-198 694.5 562 68.1
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.2e-197 692.2 562 67.8
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.3e-197 691.0 446 79.8
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.3e-197 691.0 446 79.8
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 6.7e-195 684.9 562 67.1
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 1.6e-193 680.2 449 79.5
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 2.0e-191 673.3 446 78.0
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-190 670.6 453 77.9
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-190 670.6 453 77.9
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.8e-190 669.1 446 78.3
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 8.4e-190 667.9 453 77.7
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 5.1e-187 658.7 446 78.0
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.5e-186 657.1 446 77.6
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.1e-181 641.0 548 65.7
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 1.6e-180 637.1 446 76.0
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 3.6e-180 636.0 446 74.9
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 1.7e-177 627.1 425 77.6
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 3.8e-174 615.9 445 74.8
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 5.0e-174 615.5 437 75.7
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 5.0e-174 615.5 437 75.7
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 9.4e-173 611.3 445 74.4
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 3.3e-170 602.8 445 74.2
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 4.1e-168 595.9 431 74.9
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 4.1e-168 595.9 431 74.9
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 2.0e-167 593.6 445 73.3
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 9.4e-165 584.7 451 70.5
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 9.4e-165 584.7 451 70.5
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 9.4e-165 584.7 451 70.5
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 9.4e-165 584.7 451 70.5
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 9.4e-165 584.7 451 70.5
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 3.5e-159 566.2 535 62.2
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 7.7e-159 565.1 422 74.2
BraSC159t45730Z Brassica rapa HOM05D001987 ORTHO05D006514 6.5e-158 562.0 406 75.4
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 8.5e-158 561.6 554 60.1
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 3.4e-154 549.7 431 71.0
Sp3g25720 Schrenkiella parvula HOM05D001987 ORTHO05D006514 6.3e-153 545.4 376 77.4
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 1.3e-150 537.7 448 67.4
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 1.6e-148 530.8 275 99.6
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.6e-148 530.8 550 58.0
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 2.0e-146 523.9 613 53.2
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 3.7e-145 519.6 518 60.6
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 3.3e-141 506.5 322 79.5
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 1.1e-136 491.5 303 84.2
Nn1g10074 Nelumbo nucifera HOM05D001987 ORTHO05D006514 7.0e-136 488.8 300 82.0
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 5.9e-135 485.7 559 52.2
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 1.8e-131 474.2 487 60.2
CARHR288240 Cardamine hirsuta HOM05D001987 ORTHO05D006514 5.2e-131 472.6 351 73.8
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 6.8e-131 472.2 289 81.3
BolSC28t60315H Brassica oleracea HOM05D001987 ORTHO05D006514 2.6e-130 470.3 350 73.1
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 1.7e-129 467.6 412 63.8
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 1.9e-128 464.2 300 81.0
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 2.4e-128 463.8 547 53.0
HanXRQChr14g0433081 Helianthus annuus HOM05D001987 ORTHO05D006514 1.5e-125 454.5 362 69.1
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 7.8e-119 432.2 300 76.3
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 7.8e-119 432.2 300 76.3
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 9.9e-114 415.2 449 55.5
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 5.4e-112 409.5 449 55.9
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 2.3e-110 404.1 261 82.0
Nitab4.5_0009561g0020 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.1e-109 401.7 284 75.4
MBI16_g09478_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 5.6e-109 399.4 272 74.6
ECA240G1514 Erigeron canadensis HOM05D001987 ORTHO05D006514 1.3e-105 388.3 297 70.0
Solyc09g015850.4 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.1e-102 376.3 246 78.5
Ah.10g028680 Amaranthus hybridus HOM05D001987 ORTHO05D006514 6.2e-100 369.4 293 73.0
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 6.7e-94 349.4 290 67.2
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 8.1e-92 342.4 349 59.6
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 1.9e-88 331.3 212 81.6
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 3.4e-82 310.5 245 68.6
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.6e-79 301.6 287 61.7
Peaxi162Scf00238g00149 Petunia axillaris HOM05D001987 ORTHO05D006514 2.2e-73 281.2 207 71.5
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 2.2e-68 264.6 387 46.0
MELO3C028575.2 Cucumis melo HOM05D001987 ORTHO05D006514 7.7e-66 256.1 224 62.5
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 2.5e-64 251.1 409 45.0
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 4.6e-63 246.9 165 80.0
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.3e-61 240.7 274 51.1
Lalb_Chr11g0070921 Lupinus albus HOM05D001987 ORTHO05D006514 7.9e-55 219.5 159 73.0
Sopen05g027070 Solanum pennellii HOM05D001987 ORTHO05D006514 7.0e-51 206.5 136 75.7
arahy.Tifrunner.gnm1.ann1.L3L3JQ Arachis hypogaea HOM05D001987 ORTHO05D006514 9.4e-48 196.1 269 46.5
Eucgr.J02744 Eucalyptus grandis HOM05D001987 ORTHO05D006514 9.7e-45 186.0 114 82.5
Nitab4.5_0000334g0030 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.8e-44 184.5 224 52.2
BraSC48t46330Z Brassica rapa HOM05D001987 ORTHO05D006514 2.7e-39 167.9 103 82.5
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 2.7e-39 167.9 116 76.7
Nitab4.5_0010565g0030 Nicotiana tabacum HOM05D000040 ORTHO05D000759 1.4e-38 165.6 145 59.3
CAN.G1202.8 Capsicum annuum HOM05D001987 ORTHO05D006514 2.0e-34 151.8 90 83.3
Dinv35896 Davidia involucrata HOM05D001987 ORTHO05D006514 3.8e-33 147.5 133 63.9
Ah.01g011840 Amaranthus hybridus HOM05D001987 ORTHO05D006514 1.2e-31 142.5 74 100.0
EL10Ac1g01304 Beta vulgaris HOM05D001987 ORTHO05D006514 4.7e-31 140.6 90 76.7
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 3.0e-30 137.9 191 47.6
Solyc12g035820.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.0e-30 137.9 213 41.8
Nitab4.5_0000309g0220 Nicotiana tabacum HOM05D001987 ORTHO05D006514 6.8e-30 136.7 87 74.7
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 8.9e-30 136.3 108 70.4
Nitab4.5_0009703g0120 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.7e-28 132.1 106 68.9
Nitab4.5_0000309g0190 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.6e-23 114.4 96 66.7
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 6.1e-23 113.6 165 48.5
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 4.0e-22 110.9 156 46.8
Nitab4.5_0000334g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.4e-21 107.5 138 45.7
Nitab4.5_0011784g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.4e-19 101.7 62 79.0
Solyc08g045870.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.0e-19 100.1 68 76.5
SHI01963 Sapria himalayana HOM05D001987 ORTHO05D006514 4.6e-18 97.4 96 58.3
TPR.G21771 Trifolium pratense HOM05D001987 ORTHO05D006514 7.8e-18 96.7 96 55.2
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.6e-17 93.6 116 49.1
Cpa.g.sc1367.1 Carica papaya HOM05D001987 ORTHO05D006514 4.3e-16 90.9 55 78.2
Solyc05g045770.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.1e-15 88.6 62 69.4
Nitab4.5_0000330g0070 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.1e-14 84.7 63 65.1
AagrBONN_evm.TU.Sc2ySwM_362.2082 Anthoceros agrestis HOM05D001987 ORTHO05D006514 1.5e-13 82.4 117 40.2
Solyc12g035815.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.0e-13 82.0 97 45.4
SHI01961 Sapria himalayana HOM05D001987 ORTHO05D006514 2.6e-13 81.6 157 38.9
Hund27846 Selenicereus undatus HOM05D001987 ORTHO05D004018 4.4e-13 80.9 125 43.2
Pp3c2_23480 Physcomitrium patens HOM05D001987 ORTHO05D006514 9.8e-13 79.7 403 25.8
Solyc05g045822.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.9e-12 78.2 51 70.6
Nitab4.5_0007962g0010 Nicotiana tabacum HOM05D001987 ORTHO05D006514 8.3e-12 76.6 66 69.7
SHI11171 Sapria himalayana HOM05D001987 ORTHO05D006514 8.3e-12 76.6 149 40.3
Peaxi162Scf00360g00815 Petunia axillaris HOM05D001987 ORTHO05D006514 7.0e-11 73.6 82 52.4
Solyc05g045920.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.7e-10 71.6 44 77.3
Lalb_Chr19g0127771 Lupinus albus HOM05D001987 ORTHO05D006514 3.5e-10 71.2 54 66.7
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 4.6e-10 70.9 80 51.2
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 6.0e-10 70.5 41 82.9
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 7.8e-10 70.1 119 36.1
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 7.8e-10 70.1 119 36.1
Solyc05g045824.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.7e-09 68.9 77 53.2
Solyc05g045826.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.7e-09 68.9 87 52.9
Solyc05g045828.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.9e-09 67.8 46 76.1
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 3.3e-08 64.7 119 33.6
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 3.3e-08 64.7 41 75.6
BraSC48t46240Z Brassica rapa HOM05D001987 ORTHO05D006514 1.2e-07 62.8 59 62.7
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-07 62.4 168 30.4
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-07 62.4 168 30.4
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-07 62.4 168 30.4
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 1.6e-07 62.4 104 34.6
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 2.1e-07 62.0 171 27.5
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 6.2e-07 60.5 125 31.2
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 8.1e-07 60.1 104 33.7
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 8.1e-07 60.1 104 33.7
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 8.1e-07 60.1 104 33.7
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 8.1e-07 60.1 104 33.7
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 8.1e-07 60.1 104 33.7
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 8.1e-07 60.1 104 33.7
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 2.3e-06 58.5 107 33.6
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 3.1e-06 58.2 116 32.8
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 3.1e-06 58.2 104 32.7
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 3.1e-06 58.2 104 32.7
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 5.2e-06 57.4 163 29.4
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 6.8e-06 57.0 107 31.8
AUR62043874 Chenopodium quinoa HOM05D013629 ORTHO05D010811 6.8e-06 57.0 46 71.7
SHI01964 Sapria himalayana HOM05D001987 ORTHO05D006514 6.8e-06 57.0 57 57.9
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.8e-06 57.0 107 33.6
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 8.9e-06 56.6 156 30.1
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 8.9e-06 56.6 107 31.8


User provided reference genes

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