Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.2e-163 579.7 285 100.0
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.4e-79 300.4 178 80.9
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 7.8e-70 268.1 172 74.4
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.3e-69 267.3 169 72.8
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.3e-69 267.3 166 75.9
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.7e-69 266.9 169 75.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 2.3e-69 266.5 169 73.4
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 3.0e-69 266.2 168 73.2
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 5.1e-69 265.4 178 71.9
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 5.1e-69 265.4 169 74.0
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 5.1e-69 265.4 166 74.7
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.6e-69 265.0 169 73.4
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 6.6e-69 265.0 169 73.4
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 8.7e-69 264.6 169 72.2
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 8.7e-69 264.6 166 75.3
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 8.7e-69 264.6 169 72.8
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 8.7e-69 264.6 166 75.3
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 1.1e-68 264.2 169 73.4
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.9e-68 263.5 166 74.7
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.9e-68 263.5 166 74.1
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 3.3e-68 262.7 169 72.2
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 4.3e-68 262.3 169 71.6
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 7.3e-68 261.5 169 71.6
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 9.6e-68 261.2 180 68.3
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 9.6e-68 261.2 180 70.6
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 3.6e-67 259.2 166 74.1
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 3.6e-67 259.2 163 74.8
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 4.8e-67 258.8 169 71.6
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 6.2e-67 258.5 166 72.9
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 6.2e-67 258.5 166 72.9
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.2e-67 258.5 183 66.1
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 6.2e-67 258.5 166 73.5
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 8.1e-67 258.1 167 71.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 8.1e-67 258.1 166 74.1
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 8.1e-67 258.1 164 74.4
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.1e-66 257.7 166 72.3
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.1e-66 257.7 169 71.0
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.8e-66 256.9 169 71.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.8e-66 256.9 168 72.0
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.4e-66 256.5 168 72.0
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 2.4e-66 256.5 168 72.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.0e-66 255.8 169 70.4
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 5.3e-66 255.4 168 71.4
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 5.3e-66 255.4 169 69.8
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 6.9e-66 255.0 166 69.9
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 6.9e-66 255.0 166 71.1
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 9.0e-66 254.6 166 69.9
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 9.0e-66 254.6 176 67.6
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.2e-65 254.2 166 69.9
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.5e-65 253.8 177 70.6
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.5e-65 253.8 169 69.2
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.0e-65 253.4 169 69.8
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 4.5e-65 252.3 177 70.1
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 4.5e-65 252.3 174 69.5
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 7.6e-65 251.5 166 70.5
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 9.9e-65 251.1 163 71.8
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.3e-64 250.8 166 70.5
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.7e-64 250.4 169 66.9
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.2e-64 250.0 183 66.1
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.2e-64 250.0 166 70.5
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.2e-64 250.0 164 70.7
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 4.9e-64 248.8 178 65.2
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 6.4e-64 248.4 166 69.9
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 6.4e-64 248.4 166 69.9
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.1e-63 247.7 160 73.1
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.9e-63 246.9 209 58.9
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 9.3e-63 244.6 166 69.9
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 9.3e-63 244.6 177 67.8
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.6e-62 243.8 156 70.5
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 3.5e-62 242.7 170 68.2
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 6.0e-62 241.9 155 72.3
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 6.0e-62 241.9 155 72.3
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.7e-61 238.4 165 67.3
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 6.7e-61 238.4 165 67.3
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.5e-60 236.5 165 66.7
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 3.3e-60 236.1 174 64.9
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 9.6e-60 234.6 173 61.3
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.3e-59 234.2 152 71.1
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.6e-59 233.8 165 66.1
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.8e-59 233.0 166 65.7
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.8e-59 233.0 166 65.7
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.8e-59 233.0 166 65.7
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 2.8e-59 233.0 158 69.6
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.7e-59 232.6 171 64.9
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 3.7e-59 232.6 171 64.9
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.7e-59 232.6 171 64.9
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.7e-59 232.6 171 64.9
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 4.8e-59 232.3 171 64.9
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 4.8e-59 232.3 166 65.1
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 4.8e-59 232.3 166 65.1
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 4.8e-59 232.3 171 64.9
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 6.2e-59 231.9 166 65.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 6.2e-59 231.9 171 65.5
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 8.1e-59 231.5 158 69.0
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.8e-58 230.3 167 65.3
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.4e-58 229.9 167 65.3
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.9e-58 228.4 164 65.9
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 1.2e-57 227.6 147 73.5
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.6e-57 226.5 164 64.6
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 9.9e-57 224.6 161 64.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.3e-56 224.2 183 61.2
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 3.8e-56 222.6 166 60.8
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 4.9e-56 222.2 167 62.9
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.4e-56 221.9 164 64.6
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 3.2e-55 219.5 171 64.3
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.5e-55 218.8 167 62.9
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 9.3e-55 218.0 167 63.5
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.1e-54 216.9 181 57.5
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 4.6e-54 215.7 139 71.9
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.8e-53 213.8 181 56.9
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 6.7e-53 211.8 182 56.6
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.9e-52 210.3 143 67.8
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 4.3e-52 209.1 170 58.2
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.3e-52 209.1 170 58.2
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.4e-50 203.4 160 58.8
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 5.3e-50 202.2 164 59.1
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 7.6e-49 198.4 170 57.1
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.6e-49 198.4 130 73.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.1e-47 194.5 158 59.5
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.9e-47 193.7 169 53.3
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 7.1e-47 191.8 170 52.9
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.0e-45 186.4 89 94.4
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.0e-45 186.4 133 64.7
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.5e-44 183.3 126 66.7
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.7e-44 181.4 133 63.2
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 5.3e-42 175.6 104 77.9
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 6.9e-42 175.3 166 56.0
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.1e-39 167.9 113 69.0
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.2e-39 166.0 175 46.9
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.2e-38 164.5 126 61.9
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.6e-38 164.1 106 69.8
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.0e-37 161.4 115 67.8
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.3e-37 160.2 157 48.4
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 3.9e-37 159.5 176 46.6
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 8.2e-35 151.8 91 73.6
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 3.1e-34 149.8 170 44.7
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 3.1e-34 149.8 113 61.1
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 3.1e-34 149.8 166 45.2
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 8.8e-29 131.7 81 72.8
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.0e-24 115.9 80 65.0
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.5e-23 113.6 103 53.4
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 9.4e-23 111.7 74 68.9
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 5.9e-17 92.4 64 62.5
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.0e-13 79.7 55 63.6
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.8e-11 72.8 63 55.6
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 6.3e-11 72.4 61 55.7


User provided reference genes

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