Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 1.2e-280 969.1 489 100.0
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 4.0e-231 804.7 498 82.7
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 3.2e-228 795.0 497 82.1
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 4.6e-227 791.2 498 81.1
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 3.3e-209 731.9 510 75.9
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 2.8e-200 702.2 489 72.6
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 7.6e-198 694.1 495 71.7
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 7.6e-198 694.1 495 71.7
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 1.9e-196 689.5 491 72.1
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 3.2e-196 688.7 495 71.5
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 4.6e-195 684.9 471 72.8
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 1.8e-194 682.9 501 72.5
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 1.9e-193 679.5 488 70.3
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 2.5e-193 679.1 466 73.4
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 2.8e-192 675.6 488 70.1
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 2.8e-192 675.6 472 72.7
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 6.2e-192 674.5 432 76.9
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.1e-191 673.7 471 72.2
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 1.4e-191 673.3 439 75.6
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 1.8e-191 672.9 454 74.4
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 2.4e-191 672.5 497 70.6
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 5.3e-191 671.4 493 70.0
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 6.9e-191 671.0 488 69.3
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.5e-190 669.8 474 71.3
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 2.0e-190 669.5 486 70.8
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 7.6e-190 667.5 482 70.5
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 7.6e-190 667.5 484 70.7
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.7e-189 666.4 429 77.6
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 2.2e-189 666.0 466 70.6
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 2.2e-189 666.0 460 72.6
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 3.8e-189 665.2 428 77.1
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 3.8e-189 665.2 449 73.5
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 4.9e-189 664.8 471 70.3
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 4.9e-189 664.8 455 73.2
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 4.9e-189 664.8 472 71.2
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 8.4e-189 664.1 492 69.7
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 8.4e-189 664.1 429 75.8
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 1.1e-188 663.7 498 68.1
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 1.4e-188 663.3 460 72.4
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.4e-188 663.3 488 69.5
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 1.9e-188 662.9 482 69.5
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.9e-188 662.9 501 68.7
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 1.9e-188 662.9 473 71.5
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 3.2e-188 662.1 428 76.4
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 5.5e-188 661.4 491 69.0
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 7.1e-188 661.0 427 76.6
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 7.1e-188 661.0 493 68.6
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 7.1e-188 661.0 498 68.1
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 1.2e-187 660.2 491 68.0
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 1.3e-186 656.8 464 71.6
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 1.8e-186 656.4 503 68.8
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 3.9e-186 655.2 430 74.7
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.1e-186 654.8 496 69.2
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 5.1e-186 654.8 460 70.9
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 6.7e-186 654.4 436 73.6
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 1.9e-185 652.9 486 68.3
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 3.3e-185 652.1 488 67.8
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 3.3e-185 652.1 482 68.3
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 5.7e-185 651.4 505 67.9
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 7.4e-185 651.0 498 68.5
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 2.1e-184 649.4 511 68.5
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.8e-184 649.0 497 68.0
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.7e-184 648.7 499 68.7
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 4.8e-184 648.3 505 67.7
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 4.8e-184 648.3 505 67.7
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 4.8e-184 648.3 497 68.0
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 8.2e-184 647.5 472 70.6
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 8.2e-184 647.5 511 68.3
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 1.8e-183 646.4 493 68.2
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 1.8e-183 646.4 493 68.2
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 1.8e-183 646.4 503 69.2
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 4.1e-183 645.2 493 68.0
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 4.1e-183 645.2 480 68.8
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 4.1e-183 645.2 481 67.4
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.2e-182 643.7 499 67.5
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 1.2e-182 643.7 493 67.5
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 2.6e-182 642.5 510 67.1
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 5.8e-182 641.3 450 72.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 5.8e-182 641.3 500 66.4
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 1.0e-181 640.6 448 71.2
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 1.3e-181 640.2 431 72.9
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 1.7e-181 639.8 491 67.2
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 2.2e-181 639.4 482 67.4
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 6.5e-181 637.9 453 71.3
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.4e-180 636.7 434 74.0
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.4e-180 636.7 434 74.0
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.4e-180 636.7 482 67.6
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.5e-180 636.0 463 68.5
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 3.2e-180 635.6 492 67.3
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 3.2e-180 635.6 573 60.6
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.0e-178 630.6 476 67.6
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 5.1e-178 628.2 436 71.6
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 8.7e-178 627.5 477 67.1
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.3e-176 621.3 482 67.2
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.1e-175 620.5 434 70.5
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 1.8e-175 619.8 441 69.8
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.8e-175 619.8 429 72.3
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 5.3e-175 618.2 438 68.7
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.0e-174 616.3 439 69.5
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.3e-173 613.6 443 69.5
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 3.2e-172 609.0 515 61.4
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 5.5e-172 608.2 514 60.9
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 4.6e-171 605.1 423 72.6
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 6.3e-168 594.7 431 66.6
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 8.5e-165 584.3 440 70.5
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 7.2e-164 581.3 434 65.9
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 2.3e-162 576.2 441 64.6
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 1.7e-160 570.1 428 64.5
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 1.9e-156 556.6 490 61.2
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.6e-150 537.0 448 58.9
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.0e-146 524.2 373 69.4
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.4e-143 513.1 311 80.1
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 5.9e-142 508.4 439 61.7
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 8.5e-141 504.6 445 57.5
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 9.8e-137 491.1 450 59.1
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.2e-135 484.6 477 55.8
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 1.6e-131 473.8 483 51.6
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 3.6e-131 472.6 501 50.1
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 8.6e-125 451.4 428 57.2
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 5.1e-109 399.1 441 53.7
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.9e-97 358.2 234 74.4
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.6e-83 314.3 427 40.0
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 4.8e-83 312.8 395 47.1
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 2.7e-78 297.0 251 63.7
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 3.5e-78 296.6 351 48.7
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 6.7e-77 292.4 244 59.4
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 2.1e-70 270.8 228 64.9
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 1.5e-65 254.6 174 74.1
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 5.0e-64 249.6 299 41.1
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 6.5e-64 249.2 331 48.6
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 9.3e-63 245.4 462 32.7
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 6.9e-50 202.6 388 37.4
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.0e-49 201.1 153 66.7
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 1.6e-38 164.9 130 67.7
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.7e-38 163.3 113 67.3
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 8.5e-32 142.5 96 69.8
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.5e-25 120.2 67 83.6
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 4.0e-21 107.1 78 64.1
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.5e-20 105.1 131 45.8
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 1.7e-19 101.7 69 69.6
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.2e-19 101.3 75 69.3
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 1.8e-18 98.2 57 80.7
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 1.0e-16 92.4 85 60.0
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 3.0e-13 80.9 53 67.9
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 3.0e-13 80.9 53 67.9
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 3.4e-12 77.4 64 56.2
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 9.2e-10 69.3 86 51.2


User provided reference genes

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