Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1782.7 965 100.0
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1474.9 976 80.6
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1442.2 1030 78.1
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1406.7 990 76.5
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1370.9 970 76.9
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1246.1 978 70.7
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1236.9 994 68.6
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1231.1 993 68.2
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1225.3 981 68.8
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1224.9 991 68.4
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1219.1 994 67.6
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1218.8 988 67.5
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 991 67.3
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1216.1 982 67.7
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1215.3 979 67.5
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1214.5 985 67.4
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 1049 64.7
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 982 67.6
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1212.2 979 68.2
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 983 67.0
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 983 67.0
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1208.7 980 67.2
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1208.0 992 67.8
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1208.0 979 67.4
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1206.8 991 67.6
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1206.4 991 67.1
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1202.6 999 67.5
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1199.1 992 66.3
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1198.7 979 66.7
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 1032 64.6
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 1007 65.9
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1192.6 1029 64.3
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 1026 64.7
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1191.4 976 67.1
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 990 66.8
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 976 67.0
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 1046 64.0
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1189.5 991 66.2
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 980 66.8
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1186.8 979 66.5
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 986 67.7
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 997 65.5
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1184.1 1011 64.1
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1182.9 983 66.4
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1181.4 1066 62.7
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1180.6 986 66.0
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1179.9 999 65.2
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 981 68.5
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1177.5 983 66.8
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1175.6 987 66.5
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1174.8 1019 64.1
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1174.1 1020 64.6
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1171.4 1044 64.2
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1167.9 1044 64.1
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1162.1 1036 64.4
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1162.1 1164 57.7
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1157.1 989 64.8
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1156.4 981 64.9
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1153.7 975 64.9
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1153.7 1047 61.6
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1145.6 1006 64.4
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1139.8 976 65.0
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1139.8 989 63.0
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1139.4 979 63.9
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1139.4 979 63.9
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1138.3 979 63.9
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1138.3 973 64.3
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1135.6 976 64.2
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1135.2 978 64.0
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1134.8 976 64.1
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1133.2 976 64.9
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1133.2 997 63.8
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1132.5 973 64.5
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1131.3 984 63.4
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1130.2 976 63.8
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1117.8 980 62.1
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1108.6 977 62.3
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1103.2 980 62.8
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1098.2 993 62.6
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1087.8 829 71.0
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 2.1e-308 1062.4 825 70.3
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 4.4e-306 1054.7 989 61.3
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.1e-304 1047.0 994 56.5
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 1.5e-301 1039.6 920 63.6
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 6.3e-297 1024.2 886 65.5
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 1.0e-294 1016.9 1001 56.7
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 2.8e-292 1008.8 1016 56.1
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 6.8e-291 1004.2 848 65.7
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 1.2e-282 976.9 975 57.7
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 2.5e-269 932.6 975 56.3
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 3.2e-264 915.6 757 67.4
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.8e-259 899.8 1078 48.1
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.0e-259 898.7 1034 49.3
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 6.4e-249 864.8 1061 47.2
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 2.4e-248 862.8 992 52.7
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 6.9e-243 844.7 997 48.3
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.8e-214 750.4 702 60.7
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 6.1e-207 725.3 599 66.1
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 5.5e-200 702.2 622 62.5
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.6e-197 693.3 808 52.4
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.8e-190 670.6 882 47.8
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 5.2e-190 669.1 549 67.2
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 6.0e-162 575.9 683 53.0
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.3e-158 563.9 564 56.7
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.2e-154 551.6 972 34.9
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.1e-126 458.8 360 63.6
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.9e-120 438.0 911 33.3
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.7e-119 433.7 263 82.5
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.6e-117 427.6 305 68.2
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 7.6e-117 426.0 394 58.4
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 2.2e-116 424.5 277 78.3
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 8.4e-116 422.5 269 77.0
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.9e-112 411.4 374 58.8
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.5e-109 400.2 356 59.8
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 2.8e-103 380.9 909 31.7
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 2.4e-102 377.9 288 67.7
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 2.4e-102 377.9 1260 27.5
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.3e-92 345.5 362 56.4
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.2e-77 295.8 168 88.7
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-77 295.0 291 55.7
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.5e-69 267.3 192 68.8
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-68 265.0 243 60.5
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.2e-66 259.2 145 89.0
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.4e-65 255.8 222 63.1
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.7e-55 222.2 144 72.9
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.7e-53 214.9 193 62.7
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 3.0e-52 211.5 140 75.7
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 6.2e-50 203.8 150 68.7
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.4e-49 202.6 129 73.6
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 9.8e-48 196.4 104 92.3
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.7e-47 194.5 129 71.3
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 8.3e-47 193.4 214 54.7
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 4.3e-43 181.0 242 50.8
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 2.3e-41 175.3 161 60.9
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 4.0e-41 174.5 98 86.7
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.4e-38 164.1 131 61.8
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 2.7e-37 161.8 122 68.0
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.9e-35 155.6 109 68.8
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.5e-27 128.6 85 70.6
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.4e-22 112.1 85 63.5
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 9.3e-22 110.2 133 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 7.8e-21 107.1 166 39.2
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 1.3e-20 106.3 202 39.6
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 1.4e-14 86.3 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 1.2e-08 66.6 45 73.3


User provided reference genes

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