Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 3.4e-144 515.0 262 100.0
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.1e-62 244.2 262 56.9
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 4.2e-62 242.3 256 57.8
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 4.2e-62 242.3 259 56.8
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 1.2e-53 214.2 249 55.8
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.8e-52 210.3 252 52.8
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 2.3e-52 209.9 254 52.8
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 3.0e-52 209.5 253 53.0
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 3.0e-52 209.5 260 52.7
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 5.2e-52 208.8 254 52.8
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 5.2e-52 208.8 252 53.6
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 1.2e-51 207.6 251 51.4
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.5e-51 207.2 254 52.4
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.0e-51 206.8 253 51.8
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.0e-51 206.8 253 51.8
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.0e-51 206.8 259 51.0
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 3.4e-51 206.1 263 51.3
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 3.4e-51 206.1 254 52.0
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 4.4e-51 205.7 255 51.0
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 4.4e-51 205.7 260 49.6
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 4.4e-51 205.7 252 52.0
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 5.7e-51 205.3 248 50.8
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 7.5e-51 204.9 256 52.3
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 7.5e-51 204.9 258 51.2
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.3e-50 204.1 253 51.4
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 1.7e-50 203.8 255 52.5
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.2e-50 203.4 252 51.6
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 2.2e-50 203.4 254 52.8
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 3.7e-50 202.6 253 51.0
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 3.7e-50 202.6 253 50.6
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 8.3e-50 201.4 251 52.2
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 8.3e-50 201.4 272 50.4
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 1.1e-49 201.1 252 50.4
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.4e-49 200.7 255 52.9
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.8e-49 200.3 262 46.9
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 1.8e-49 200.3 253 51.0
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 2.4e-49 199.9 254 50.8
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 2.4e-49 199.9 254 50.8
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 2.4e-49 199.9 286 47.2
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 4.1e-49 199.1 252 52.4
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 5.4e-49 198.7 254 52.4
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 5.4e-49 198.7 248 51.6
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 9.2e-49 198.0 286 47.2
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 9.2e-49 198.0 252 51.6
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.2e-48 197.6 261 49.8
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.6e-48 197.2 251 52.2
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 2.0e-48 196.8 250 52.8
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 2.7e-48 196.4 252 50.0
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 3.5e-48 196.1 253 49.4
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 3.5e-48 196.1 252 50.4
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 4.5e-48 195.7 255 49.4
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 4.5e-48 195.7 255 49.4
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 5.9e-48 195.3 269 49.1
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 7.8e-48 194.9 256 49.2
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 7.8e-48 194.9 258 49.2
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 7.8e-48 194.9 251 50.6
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 7.8e-48 194.9 256 49.6
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 1.3e-47 194.1 252 49.6
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 1.3e-47 194.1 250 49.6
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 1.3e-47 194.1 251 51.0
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.3e-47 194.1 252 50.0
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.7e-47 193.7 252 49.6
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 2.3e-47 193.4 252 49.6
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 2.3e-47 193.4 257 47.9
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.9e-47 193.0 252 50.4
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.9e-47 193.0 252 50.4
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 2.9e-47 193.0 251 50.6
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 3.9e-47 192.6 252 49.6
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 5.0e-47 192.2 249 50.6
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 5.0e-47 192.2 258 48.4
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 6.6e-47 191.8 259 48.3
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 6.6e-47 191.8 252 49.6
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 8.6e-47 191.4 251 50.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-46 191.0 254 48.8
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-46 191.0 254 48.8
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.1e-46 191.0 249 49.0
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.1e-46 191.0 250 50.0
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 2.5e-46 189.9 249 50.6
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 2.5e-46 189.9 247 50.2
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.3e-46 189.1 254 49.2
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 5.6e-46 188.7 251 49.4
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 7.3e-46 188.3 257 49.4
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 9.5e-46 188.0 250 50.0
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 4.0e-44 182.6 251 46.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 8.9e-44 181.4 240 49.2
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 2.6e-43 179.9 249 49.4
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 4.4e-43 179.1 130 75.4
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 7.5e-43 178.3 240 49.6
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 8.3e-42 174.9 135 69.6
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 2.0e-40 170.2 130 70.0
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 3.5e-40 169.5 134 67.2
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 4.6e-40 169.1 134 68.7
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.0e-39 167.9 135 64.4
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.0e-39 167.9 250 42.8
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 3.9e-39 166.0 260 45.0
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 6.6e-39 165.2 247 42.9
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.2e-37 161.0 247 42.9
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 3.6e-37 159.5 85 91.8
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 8.0e-37 158.3 225 48.4
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.7e-34 149.4 259 41.3
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 6.4e-34 148.7 232 46.1
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 3.5e-32 142.9 133 62.4
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 7.3e-30 135.2 115 68.7
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 7.3e-30 135.2 123 60.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.7e-26 122.9 81 77.8
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 4.9e-26 122.5 139 51.1
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 1.6e-24 117.5 161 48.4
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.1e-22 111.3 251 33.5
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 6.2e-21 105.5 60 83.3
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 2.4e-20 103.6 207 40.6
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 6.4e-18 95.5 189 40.7
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 2.1e-16 90.5 136 44.9
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.1e-14 84.7 84 58.3
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.5e-14 83.6 83 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 3.4e-11 73.2 81 50.6
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.9e-10 70.1 155 36.1
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.1e-09 68.2 134 36.6
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 1.9e-09 67.4 144 38.9
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 2.5e-06 57.0 204 29.4


User provided reference genes

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