Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g149670 Amaranthus hybridus HOM05D006611 ORTHO05D008093 1.3e-143 513.1 258 100.0
EL10Ac3g07417 Beta vulgaris HOM05D006611 ORTHO05D008093 4.3e-83 312.0 307 57.0
AUR62020907 Chenopodium quinoa HOM05D006611 ORTHO05D008093 4.2e-78 295.4 293 58.7
AUR62018512 Chenopodium quinoa HOM05D006611 ORTHO05D008093 6.7e-60 235.0 231 58.9
Hund19031 Selenicereus undatus HOM05D006611 ORTHO05D008093 6.9e-57 224.9 294 46.3
Sc26g0002170 Simmondsia chinensis HOM05D006611 ORTHO05D008093 7.6e-48 194.9 291 44.3
Cfa008675 Carpinus fangiana HOM05D006611 ORTHO05D008093 2.5e-46 189.9 299 42.5
Haze_11695 Corylus avellana HOM05D006611 ORTHO05D008093 3.0e-44 183.0 299 41.1
Dinv27167 Davidia involucrata HOM05D006611 ORTHO05D008093 3.9e-44 182.6 299 40.1
CiPaw.01G110700 Carya illinoinensis HOM05D006611 ORTHO05D008093 1.1e-43 181.0 296 43.9
Manes.05G193800 Manihot esculenta HOM05D006611 ORTHO05D008093 1.1e-43 181.0 300 42.3
Cpa.g.c30743.1 Carica papaya HOM05D006611 ORTHO05D008093 1.5e-43 180.6 273 43.6
GSVIVG01031632001 Vitis vinifera HOM05D006611 ORTHO05D008093 8.2e-42 174.9 280 43.2
Oeu022682.1 Olea europaea HOM05D006611 ORTHO05D008093 1.4e-41 174.1 241 45.6
TAR362G0137 Trochodendron aralioides HOM05D006611 ORTHO05D008093 2.4e-41 173.3 299 41.1
Thecc.04G189800 Theobroma cacao HOM05D006611 ORTHO05D008093 3.1e-41 172.9 300 41.3
Migut.G01149 Erythranthe guttata HOM05D006611 ORTHO05D008093 5.3e-41 172.2 288 41.3
Hma1.2p1_0349F.1_g132210 Hydrangea macrophylla HOM05D006611 ORTHO05D008093 5.3e-41 172.2 296 40.2
RcHm_v2.0_Chr4g0411421 Rosa chinensis HOM05D006611 ORTHO05D008093 5.3e-41 172.2 298 39.9
ATR0609G120 Amborella trichopoda HOM05D006611 ORTHO05D008093 9.0e-41 171.4 292 38.7
Gohir.A02G016300 Gossypium hirsutum HOM05D006611 ORTHO05D008093 2.0e-40 170.2 297 40.1
Gorai.005G022200 Gossypium raimondii HOM05D006611 ORTHO05D008093 2.0e-40 170.2 296 40.5
PGR119G2551 Punica granatum HOM05D006611 ORTHO05D008093 2.0e-40 170.2 302 41.7
TWI15G1006 Tripterygium wilfordii HOM05D006611 ORTHO05D008093 2.0e-40 170.2 221 48.0
Gohir.D02G018000 Gossypium hirsutum HOM05D006611 ORTHO05D008093 2.6e-40 169.9 296 40.5
Duzib268G0202 Durio zibethinus HOM05D006611 ORTHO05D008093 3.4e-40 169.5 311 38.9
Peaxi162Scf00286g00643 Petunia axillaris HOM05D006611 ORTHO05D008093 4.5e-40 169.1 224 44.6
FAN22G2055 Fragaria x ananassa HOM05D006611 ORTHO05D008093 5.9e-40 168.7 293 38.2
SalBow2G1730 Salvia bowleyana HOM05D006611 ORTHO05D008093 5.9e-40 168.7 297 40.7
FvH4_4g12580 Fragaria vesca HOM05D006611 ORTHO05D008093 7.7e-40 168.3 295 38.3
Sed0010349 Sechium edule HOM05D006611 ORTHO05D008093 7.7e-40 168.3 293 42.3
Phvul.001G264000 Phaseolus vulgaris HOM05D006611 ORTHO05D008093 1.0e-39 167.9 229 45.0
Prupe.1G174400 Prunus persica HOM05D006611 ORTHO05D008093 1.0e-39 167.9 293 38.2
VMungo1383G2825 Vigna mungo HOM05D006611 ORTHO05D008093 1.3e-39 167.5 276 40.9
Atru.chr3.1749 Acer truncatum HOM05D006611 ORTHO05D008093 1.7e-39 167.2 200 47.0
MSTRG.4275 Avicennia marina HOM05D006611 ORTHO05D008093 1.7e-39 167.2 297 39.4
CANSAT78G2125 Cannabis sativa HOM05D006611 ORTHO05D008093 2.2e-39 166.8 204 48.0
FAN07G1495 Fragaria x ananassa HOM05D006611 ORTHO05D008093 2.9e-39 166.4 293 37.9
Ciclev10005159m.g Citrus clementina HOM05D006611 ORTHO05D008093 3.8e-39 166.0 280 40.4
Cc03_g09680 Coffea canephora HOM05D006611 ORTHO05D008093 3.8e-39 166.0 307 39.7
MBI07_g21331_MAGBIO Magnolia biondii HOM05D006611 ORTHO05D008093 3.8e-39 166.0 292 38.4
COL.COLO4_35975 Corchorus olitorius HOM05D006611 ORTHO05D008093 5.0e-39 165.6 297 39.4
CAN.G681.3 Capsicum annuum HOM05D006611 ORTHO05D008093 6.5e-39 165.2 293 40.3
PSO017G3847 Papaver somniferum HOM05D006611 ORTHO05D008093 6.5e-39 165.2 275 41.1
Glyma.18G004100 Glycine max HOM05D006611 ORTHO05D008093 8.5e-39 164.9 295 40.7
Lalb_Chr23g0278231 Lupinus albus HOM05D006611 ORTHO05D008093 1.4e-38 164.1 257 42.0
Nn3g20169 Nelumbo nucifera HOM05D006611 ORTHO05D008093 1.4e-38 164.1 211 46.0
MD04G1024000 Malus domestica HOM05D006611 ORTHO05D008093 2.5e-38 163.3 295 37.3
Eucgr.H02624 Eucalyptus grandis HOM05D006611 ORTHO05D008093 3.2e-38 162.9 215 47.4
FAN17G1417 Fragaria x ananassa HOM05D006611 ORTHO05D008093 3.2e-38 162.9 195 47.2
PSO675G4224 Papaver somniferum HOM05D006611 ORTHO05D008093 4.2e-38 162.5 243 42.8
Potri.014G148500 Populus trichocarpa HOM05D006611 ORTHO05D008093 4.2e-38 162.5 207 46.9
CDE09G1077 Ceratophyllum demersum HOM05D006611 ORTHO05D008093 5.5e-38 162.2 198 47.0
Atru.BG.109.p Acer truncatum HOM05D006611 ORTHO05D008093 7.2e-38 161.8 201 45.8
PGSC0003DMG400016625 Solanum tuberosum HOM05D006611 ORTHO05D008093 9.4e-38 161.4 279 39.4
Aqoxy206s001 Aquilegia oxysepala HOM05D006611 ORTHO05D008093 1.6e-37 160.6 291 38.1
MELO3C017732.2 Cucumis melo HOM05D006611 ORTHO05D008093 2.1e-37 160.2 216 46.3
Lsat_1_v5_gn_6_58281 Lactuca sativa HOM05D006611 ORTHO05D008093 2.1e-37 160.2 287 38.0
Solyc09g097910.4 Solanum lycopersicum HOM05D006611 ORTHO05D008093 2.1e-37 160.2 295 38.0
Glyma.11G252900 Glycine max HOM05D006611 ORTHO05D008093 2.7e-37 159.8 297 41.4
Ca_16438_v3 Cicer arietinum L. HOM05D006611 ORTHO05D008093 3.6e-37 159.5 292 39.4
Sopen09g035850 Solanum pennellii HOM05D006611 ORTHO05D008093 6.1e-37 158.7 293 37.9
Nitab4.5_0000309g0280 Nicotiana tabacum HOM05D006611 ORTHO05D008093 1.0e-36 157.9 194 45.9
Sabra14G0112100 Salix brachista HOM05D006611 ORTHO05D008093 3.0e-36 156.4 255 39.6
Medtr3g084860 Medicago truncatula HOM05D006611 ORTHO05D008093 8.8e-36 154.8 304 37.8
TPR.G18091 Trifolium pratense HOM05D006611 ORTHO05D008093 1.5e-35 154.1 209 45.0
ClCG07G015520 Citrullus lanatus HOM05D006611 ORTHO05D008093 3.3e-35 152.9 246 41.5
CsaV3_4G003140 Cucumis sativus L. HOM05D006611 ORTHO05D008093 3.3e-35 152.9 217 45.2
DCAR_026674 Daucus carota HOM05D006611 ORTHO05D008093 3.3e-35 152.9 296 38.9
Lj6g0014510 Lotus japonicus HOM05D006611 ORTHO05D008093 3.3e-35 152.9 226 42.9
HanXRQChr11g0341511 Helianthus annuus HOM05D006611 ORTHO05D008093 5.7e-35 152.1 225 41.3
Rhsim09G0063200 Rhododendron simsii HOM05D006611 ORTHO05D008093 1.7e-34 150.6 197 44.2
ECA233G5108 Erigeron canadensis HOM05D006611 ORTHO05D008093 4.8e-34 149.1 199 44.7
Thhalv10002553m.g Eutrema salsugineum HOM05D006611 ORTHO05D008093 8.2e-34 148.3 292 36.3
AT3G23700 Arabidopsis thaliana HOM05D006611 ORTHO05D008093 2.4e-33 146.7 282 36.2
ECA233G1726 Erigeron canadensis HOM05D006611 ORTHO05D008093 5.3e-33 145.6 196 44.4
BcaB06g26531 Brassica carinata HOM05D006611 ORTHO05D008093 1.5e-32 144.1 291 37.5
Sp3g21410 Schrenkiella parvula HOM05D006611 ORTHO05D008093 1.5e-32 144.1 294 36.7
A07p08680 Brassica napus HOM05D006611 ORTHO05D008093 2.0e-32 143.7 291 37.5
CARHR099680 Cardamine hirsuta HOM05D006611 ORTHO05D008093 2.6e-32 143.3 230 39.6
BraA07t28659Z Brassica rapa HOM05D006611 ORTHO05D008093 4.5e-32 142.5 292 37.3
BcaC06g35559 Brassica carinata HOM05D006611 ORTHO05D008093 7.7e-32 141.7 291 37.5
C07p13520 Brassica napus HOM05D006611 ORTHO05D008093 7.7e-32 141.7 291 37.5
BolC7t41847H Brassica oleracea HOM05D006611 ORTHO05D008093 7.7e-32 141.7 291 37.5
Aa31LG8G10250 Aethionema arabicum HOM05D006611 ORTHO05D008093 2.2e-31 140.2 297 36.7
AL3G38570 Arabidopsis lyrata HOM05D006611 ORTHO05D008093 2.2e-31 140.2 285 35.1
THA.LOC104804781 Tarenaya hassleriana HOM05D006611 ORTHO05D008093 2.2e-31 140.2 234 38.5
Carub.0003s2400 Capsella rubella HOM05D006611 ORTHO05D008093 3.8e-31 139.4 192 42.7
Hma1.2p1_0349F.1_g132215 Hydrangea macrophylla HOM05D006611 ORTHO05D008093 6.5e-31 138.7 121 60.3
HPP92_003169 Vanilla planifolia HOM05D006611 ORTHO05D008093 1.1e-30 137.9 205 39.5
THA.LOC104808678 Tarenaya hassleriana HOM05D006611 ORTHO05D008093 1.4e-30 137.5 302 34.8
QL06p028250 Quercus lobata HOM05D006611 ORTHO05D008093 3.2e-30 136.3 240 38.3
Psat5g098720 Pisum sativum HOM05D006611 ORTHO05D008093 2.1e-29 133.7 126 58.7
Lalb_Chr13g0294601 Lupinus albus HOM05D006611 ORTHO05D008093 2.7e-29 133.3 196 39.8
SGA_v2.0_scaffold106G30652 Striga asiatica HOM05D006611 ORTHO05D008093 1.8e-28 130.6 224 36.6
unitig_37.g12002 Utricularia gibba HOM05D006611 ORTHO05D008093 3.0e-28 129.8 123 54.5
Zm00001eb064340 Zea mays HOM05D006611 ORTHO05D008093 3.3e-27 126.3 210 40.0
Os03g0844900 Oryza sativa ssp. japonica HOM05D006611 ORTHO05D008093 1.7e-26 124.0 242 36.0
arahy.Tifrunner.gnm1.ann1.7JZ7TP Arachis hypogaea HOM05D006611 ORTHO05D008093 3.1e-25 119.8 177 41.2
CSS0007881 Camellia sinensis var. sinensis HOM05D006611 ORTHO05D008093 5.3e-25 119.0 169 41.4
CSS0017319 Camellia sinensis var. sinensis HOM05D006611 ORTHO05D008093 5.3e-25 119.0 169 41.4
AagrBONN_evm.TU.Sc2ySwM_344.1810 Anthoceros agrestis HOM05D006611 ORTHO05D008093 1.2e-24 117.9 195 37.4
Pp3c14_26600 Physcomitrium patens HOM05D006611 ORTHO05D008093 8.5e-23 111.7 248 29.8
vmacro00429 Vaccinium macrocarpon HOM05D006611 ORTHO05D008093 1.5e-22 110.9 192 38.5
Actinidia32956 Actinidia chinensis HOM05D006611 ORTHO05D008093 3.2e-22 109.8 296 35.1
SEGI_31712 Sequoiadendron giganteum HOM05D006611 ORTHO05D008093 2.1e-21 107.1 122 45.9
SMO137G0002 Selaginella moellendorffii HOM05D006611 ORTHO05D008093 2.3e-20 103.6 192 32.3
Mapoly0045s0081 Marchantia polymorpha HOM05D006611 ORTHO05D008093 1.4e-17 94.4 124 43.5
Pp3c17_14740 Physcomitrium patens HOM05D006611 ORTHO05D008093 2.0e-16 90.5 196 30.1
Lj3A264T20 Lonicera japonica HOM05D006611 ORTHO05D008093 2.7e-13 80.1 85 51.8
Cre03.g148950 Chlamydomonas reinhardtii HOM05D006611 ORTHO05D008093 5.9e-08 62.4 113 33.6
Actinidia35916 Actinidia chinensis HOM05D006611 ORTHO05D008093 7.7e-08 62.0 74 44.6
MCO09G038 Micromonas commoda HOM05D006611 ORTHO05D008093 6.5e-07 58.9 128 32.8
Pp3c15_23440 Physcomitrium patens HOM05D005566 ORTHO05D007534 3.2e-06 56.6 166 30.1
Glyma.09G031800 Glycine max HOM05D004458 ORTHO05D005455 9.4e-06 55.1 171 23.4


User provided reference genes

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