Gene: AT3G23700
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G23700
- Transcript Identifier AT3G23700.1
- Gene Type Coding gene
- Location Chr3 : 8531689-8533742 : negative
Gene Family Information
- ID HOM05D006611
- #Genes/#Species 121/98
- Phylogenetic origin
- ID ORTHO05D008093
- #Genes/#Species 123/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G23700.1
- uniprot Q9LK47
Descriptions
- Description Nucleic acid-binding proteins superfamily
- Computational description Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; INVOLVED IN: response to cold; LOCATED IN: chloroplast stroma, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 30347 Blast hits to 20342 proteins in 2814 species: Archae - 227; Bacteria - 22388; Metazoa - 193; Fungi - 227; Plants - 347; Viruses - 0; Other Eukaryotes - 6965 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000481 | IMP | Gene Ontology | maturation of 5S rRNA | 1 |
| GO:0009737 | IMP | Gene Ontology | response to abscisic acid | 1 |
| GO:0032508 | IDA | Gene Ontology | DNA duplex unwinding | 1 |
| GO:0034337 | IDA | Gene Ontology | RNA folding | 1 |
| GO:0009409 | IEP | GOA Database | response to cold |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA, HDA | Gene Ontology | mRNA binding | 2 3 |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IDA, HDA ISM | Gene Ontology | chloroplast | 1 4 |
| GO:0005634 | IDA | GOA Database | nucleus | |
| GO:0005634 | HDA | Gene Ontology | nucleus | 5 |
| GO:0009570 | IDA | GOA Database | chloroplast stroma | |
| GO:0009570 | HDA | Gene Ontology | chloroplast stroma | 6 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |