Gene: Sopen09g035850

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g035850
  • Transcript Identifier Sopen09g035850.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 83556507-83560233 : positive

Gene Family Information

  • ID HOM05D006611
  • #Genes/#Species 121/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g035850.1

Descriptions

  • Description Nucleic acid-binding proteins superfamily | FUNCTIONS IN: RNA binding | INVOLVED IN: response to cold | LOCATED IN: chloroplast stroma, nucleus, chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like , Nucleic acid-binding, OB-fold , Ribosomal protein S1, RNA-binding domain | BEST Arabidopsis thaliana protein match is: ribosomal protein S1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G23700
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT3G23700
GO:0000481
ISO
PLAZA Integrative Orthologymaturation of 5S rRNA AT3G23700
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT3G23700
GO:0034337
ISO
PLAZA Integrative OrthologyRNA folding AT3G23700

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G23700

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G23700
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G23700
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G23700

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR022967 RNA-binding domain, S1
IPR003029 S1 domain
Mapman id Description
35.1 not assigned.annotated