Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 0.0e+00 2065.8 1203 100.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1119.0 1108 58.4
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 1.1e-295 1020.4 1102 53.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 5.3e-293 1011.5 1102 52.5
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 1.0e-291 1007.3 1102 52.6
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 2.5e-290 1002.7 1098 52.5
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 4.2e-290 1001.9 1108 53.6
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 4.2e-290 1001.9 1102 53.4
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 6.3e-286 988.0 1102 53.0
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 1.3e-278 963.8 1102 51.2
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 6.9e-277 958.0 1102 50.7
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 1.5e-276 956.8 1108 51.3
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 3.8e-275 952.2 1103 52.4
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 1.0e-272 944.1 1103 49.7
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 1.4e-272 943.7 1205 48.5
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 2.0e-271 939.9 1108 50.9
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 2.8e-270 936.0 1103 49.5
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.8e-269 933.3 905 58.8
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 2.4e-269 932.9 1102 49.3
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 2.0e-268 929.9 1102 50.4
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 3.5e-268 929.1 1108 49.6
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 3.8e-267 925.6 1108 49.2
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 1.9e-266 923.3 995 52.6
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 1.9e-266 923.3 1101 49.4
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 9.4e-266 921.0 1106 49.6
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 9.4e-266 921.0 1108 52.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 1.0e-264 917.5 1106 48.6
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 6.7e-264 914.8 1108 48.4
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 2.6e-263 912.9 1109 49.1
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 2.8e-262 909.4 1128 50.0
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 4.8e-262 908.7 1102 47.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 1.1e-261 907.5 1102 47.7
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 3.1e-261 906.0 1102 48.8
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 2.7e-260 902.9 1102 53.9
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 4.5e-260 902.1 1253 44.9
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 1.1e-258 897.5 1103 49.3
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.9e-258 896.7 1102 50.0
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 5.5e-258 895.2 1102 49.5
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 2.7e-257 892.9 1103 49.1
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 6.1e-257 891.7 1125 50.3
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 6.1e-257 891.7 1110 48.0
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.4e-256 890.6 1102 48.9
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 2.3e-256 889.8 1102 50.6
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 3.4e-255 885.9 1103 48.3
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 7.5e-255 884.8 1102 48.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 4.5e-252 875.5 1102 48.5
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 5.0e-251 872.1 1112 48.4
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 8.5e-251 871.3 1224 44.9
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-249 867.5 1103 49.4
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 6.1e-249 865.1 1112 48.5
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.0e-247 860.1 1113 46.6
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 2.6e-247 859.8 1102 46.6
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 3.4e-247 859.4 1110 48.8
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.4e-245 853.2 1056 49.4
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 3.1e-245 852.8 1125 48.1
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 5.4e-245 852.0 1110 48.5
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 2.7e-244 849.7 1110 48.4
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 1.3e-243 847.4 1098 46.3
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 2.9e-243 846.3 1112 47.5
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 1.1e-242 844.3 1102 47.8
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 1.0e-240 837.8 1103 47.1
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 1.0e-240 837.8 1102 45.7
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 2.3e-240 836.6 1103 51.2
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.7e-238 830.5 1158 45.3
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 2.2e-238 830.1 1103 51.0
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 2.9e-238 829.7 1103 51.0
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 1.1e-237 827.8 1098 46.4
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 2.4e-237 826.6 1108 48.4
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 3.5e-236 822.8 1103 45.2
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 4.6e-236 822.4 1108 47.3
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.1e-234 817.8 1104 44.7
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 7.5e-231 805.1 1102 46.7
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 1.3e-230 804.3 1098 48.2
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 8.3e-230 801.6 1103 47.2
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 1.9e-229 800.4 1103 43.9
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 6.4e-222 775.4 1049 45.5
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 8.3e-222 775.0 1102 45.2
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 1.9e-218 763.8 909 52.7
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.5e-199 701.0 751 54.2
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 1.1e-194 684.9 1067 41.0
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.8e-187 661.0 788 53.7
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 3.1e-184 650.2 1102 37.8
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.6e-183 647.1 766 50.1
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 7.9e-172 609.0 733 50.9
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.3e-171 608.2 626 55.6
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.3e-171 608.2 626 55.6
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 3.4e-167 593.6 785 47.5
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 8.5e-166 589.0 956 41.4
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 5.9e-159 566.2 384 78.6
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 6.1e-156 556.2 1100 34.8
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 8.0e-148 529.3 748 44.4
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 1.1e-141 508.8 1110 33.3
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.5e-133 481.1 1113 33.0
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 7.0e-128 463.0 350 70.6
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.7e-121 441.8 296 78.0
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.1e-120 439.1 1019 33.7
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 3.3e-117 427.6 840 35.0
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.1e-111 408.3 257 82.1
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 3.6e-108 397.5 1059 29.7
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 7.5e-106 389.8 249 81.9
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.2e-87 329.3 177 92.7
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 3.1e-75 288.1 540 34.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 5.5e-72 277.3 392 43.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 2.3e-70 271.9 391 40.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 2.3e-70 271.9 945 27.3
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.1e-69 269.6 391 40.4
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 8.4e-65 253.4 447 38.3
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 2.5e-61 241.9 372 44.1
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.7e-61 240.7 392 43.4
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 7.4e-61 240.4 372 44.1
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.2e-60 238.8 392 43.4
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 8.5e-57 226.9 336 44.0
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.0e-54 219.9 1003 24.1
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.7e-53 213.4 140 80.7
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.7e-52 212.6 394 40.6
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 5.3e-51 207.6 389 38.0
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.5e-49 200.7 139 77.7
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 1.1e-45 189.9 272 42.6
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 7.4e-45 187.2 983 26.4
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.2e-42 179.9 233 44.6
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 9.7e-37 160.2 87 93.1
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.6e-34 152.1 241 39.4
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.7e-33 149.4 106 74.5
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 2.1e-31 142.5 205 44.9
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 4.1e-27 128.3 224 33.5
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.4e-22 113.2 150 43.3
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 2.6e-21 109.0 64 84.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 2.8e-20 105.5 64 78.1
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-19 103.2 106 56.6
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 8.0e-15 87.4 170 34.7
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 8.9e-14 84.0 117 41.9
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 2.0e-13 82.8 77 58.4
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 7.5e-13 80.9 150 38.0
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 4.1e-11 75.1 128 35.9
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.7e-09 69.7 63 63.5
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 4.3e-08 65.1 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 5.6e-08 64.7 56 67.9
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 6.1e-07 61.2 46 71.7
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.0e-06 60.5 60 50.0
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 3.1e-06 58.9 138 30.4
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 6.8e-06 57.8 181 29.8


User provided reference genes

Program Settings