Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 0.0e+00 1107.0 546 100.0
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.3e-246 856.3 553 79.0
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.0e-243 845.1 568 76.2
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.2e-222 775.8 555 71.7
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 4.2e-221 771.5 552 71.2
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.2e-207 726.9 549 66.3
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.2e-206 722.6 547 68.0
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.6e-204 716.5 555 65.8
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 3.6e-204 715.3 552 65.6
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.8e-203 713.0 546 66.3
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 8.8e-203 710.7 549 66.3
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 1.1e-202 710.3 548 65.7
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 1.5e-202 709.9 538 65.6
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.3e-201 706.8 548 66.1
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.7e-201 706.4 563 65.2
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 2.8e-201 705.7 550 64.9
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.8e-201 705.7 558 65.6
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 4.8e-201 704.9 551 65.9
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 6.3e-201 704.5 557 65.0
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 3.1e-200 702.2 557 64.6
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 4.1e-200 701.8 532 67.5
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 6.9e-200 701.0 547 65.8
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 6.9e-200 701.0 546 65.9
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 6.9e-200 701.0 547 65.6
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.2e-199 700.3 546 64.7
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 2.0e-199 699.5 548 64.1
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 2.6e-199 699.1 549 65.6
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 7.7e-199 697.6 546 64.5
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 2.9e-198 695.7 552 63.9
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.1e-197 693.7 560 63.2
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 1.1e-197 693.7 569 63.3
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 1.4e-197 693.3 553 64.4
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.5e-197 692.6 557 63.6
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 4.2e-197 691.8 560 63.0
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 7.2e-197 691.0 557 63.6
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 9.4e-197 690.6 567 65.3
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.2e-196 690.3 567 63.0
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 1.6e-196 689.9 547 64.5
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 2.1e-196 689.5 536 64.9
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.1e-196 689.5 555 63.1
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.1e-196 689.5 555 64.5
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 2.7e-196 689.1 554 63.9
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 2.7e-196 689.1 545 63.7
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 6.1e-196 688.0 536 64.9
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 7.9e-196 687.6 552 62.9
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.4e-195 686.8 554 63.7
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.8e-195 686.4 551 63.9
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 3.0e-195 685.6 559 64.0
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 5.2e-195 684.9 548 64.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.5e-194 683.3 548 64.1
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 2.6e-194 682.6 574 61.7
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 3.3e-194 682.2 547 63.1
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 3.3e-194 682.2 546 64.8
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 3.3e-194 682.2 575 62.3
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 1.3e-193 680.2 550 64.2
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 2.8e-193 679.1 551 63.9
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 1.1e-192 677.2 554 63.4
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 7.0e-192 674.5 548 63.5
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 7.0e-192 674.5 548 63.5
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 7.0e-192 674.5 514 66.0
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 9.1e-192 674.1 549 63.6
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.6e-191 673.3 570 61.6
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 2.0e-191 672.9 548 63.9
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 2.0e-191 672.9 548 63.7
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 7.7e-191 671.0 550 63.8
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 5.0e-190 668.3 574 61.5
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 5.5e-189 664.8 552 62.7
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 1.2e-188 663.7 546 62.5
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.0e-187 660.6 553 61.7
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.4e-187 660.2 643 55.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 6.7e-187 657.9 546 61.9
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.2e-186 657.1 536 61.9
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.0e-186 656.4 537 62.6
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 5.7e-186 654.8 538 62.1
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 6.3e-185 651.4 553 62.4
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.1e-184 650.6 602 57.5
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 1.7e-182 643.3 544 60.8
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 8.5e-182 641.0 549 61.2
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 2.7e-180 636.0 596 58.1
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 6.8e-179 631.3 546 59.2
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 8.8e-179 630.9 550 59.1
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 4.2e-173 612.1 560 57.7
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 7.2e-173 611.3 523 60.0
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.8e-172 609.4 487 64.9
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 2.0e-170 603.2 501 61.5
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 9.8e-170 600.9 589 57.0
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 1.7e-169 600.1 571 54.5
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.1e-168 597.4 465 66.5
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 3.8e-166 589.0 490 62.7
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 2.3e-163 579.7 389 72.2
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.0e-163 579.3 568 55.8
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 3.2e-160 569.3 475 61.7
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 4.1e-160 568.9 511 58.9
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 7.0e-160 568.2 550 56.7
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.1e-156 556.6 547 55.9
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 6.8e-155 551.6 360 73.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.1e-147 527.7 545 53.0
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 7.1e-144 515.0 562 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.2e-143 514.2 529 51.6
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 3.0e-142 509.6 435 61.8
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 8.4e-137 491.5 554 48.4
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 1.9e-133 480.3 276 80.8
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.4e-130 469.2 273 80.6
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.9e-121 439.9 477 51.2
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.8e-116 423.3 342 60.2
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 6.9e-115 418.7 385 58.2
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.5e-111 406.4 217 86.6
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 1.0e-110 404.8 320 58.8
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 4.0e-107 392.9 541 44.0
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 5.5e-104 382.5 514 44.9
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 1.4e-99 367.9 369 55.3
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.8e-99 367.5 284 71.1
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.2e-95 354.8 403 51.4
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.7e-89 334.3 403 47.9
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.6e-87 327.8 558 34.9
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.1e-85 321.6 186 82.3
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.7e-84 317.8 186 79.6
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 4.8e-84 316.2 270 58.5
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 4.2e-80 303.1 493 37.1
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 5.2e-78 296.2 507 37.3
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.9e-73 280.4 182 71.4
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.1e-71 272.7 290 53.1
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.5e-69 268.1 312 42.0
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.1e-63 247.7 314 40.8
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 6.1e-63 246.1 140 80.7
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 5.0e-57 226.5 275 50.9
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 6.5e-57 226.1 284 47.2
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 2.6e-53 214.2 280 46.4
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 8.3e-52 209.1 119 80.7
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.9e-44 183.3 249 45.4
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.0e-41 174.1 352 31.8
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 3.7e-36 157.1 93 77.4
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 2.4e-35 154.5 357 25.5
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 3.6e-31 140.6 122 56.6
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 6.8e-30 136.3 82 74.4
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 7.5e-29 132.9 596 24.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 6.8e-22 109.8 99 55.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.4e-19 101.3 62 72.6
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 8.7e-17 92.8 191 31.4
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 4.4e-13 80.5 55 65.5
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.4e-13 80.5 60 60.0
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.2e-10 72.4 169 29.0
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 2.1e-07 61.6 45 62.2
FvH4_6g44671 Fragaria vesca HOM05D005206 ORTHO05D006219 5.3e-06 57.0 35 77.1


User provided reference genes

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