Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g127600 Amaranthus hybridus HOM05D001374 ORTHO05D013421 3.5e-80 301.6 154 100.0
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 1.6e-21 106.7 89 64.0
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 3.4e-19 99.0 89 59.6
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.3e-18 97.1 89 57.3
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 3.8e-18 95.5 89 56.2
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 4.9e-18 95.1 89 59.6
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 1.9e-14 83.2 89 51.7
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 2.5e-14 82.8 83 51.8
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 4.3e-14 82.0 81 51.9
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 1.3e-13 80.5 83 50.6
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 1.6e-13 80.1 82 52.4
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 2.1e-13 79.7 83 49.4
Dinv21062 Davidia involucrata HOM05D001374 ORTHO05D004296 2.8e-13 79.3 83 49.4
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 2.8e-13 79.3 83 49.4
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 2.8e-13 79.3 89 47.2
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 3.6e-13 79.0 83 50.6
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 3.6e-13 79.0 91 48.4
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 4.8e-13 78.6 86 47.7
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.8e-13 78.6 95 44.2
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 6.2e-13 78.2 83 49.4
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 8.1e-13 77.8 82 48.8
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 8.1e-13 77.8 80 52.5
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.1e-12 77.4 90 48.9
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 1.1e-12 77.4 81 49.4
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.1e-12 77.4 81 48.1
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 1.1e-12 77.4 83 49.4
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 1.4e-12 77.0 83 48.2
CDE07G1626 Ceratophyllum demersum HOM05D001374 ORTHO05D013421 1.4e-12 77.0 81 46.9
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 1.4e-12 77.0 90 47.8
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.4e-12 77.0 89 47.2
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 1.4e-12 77.0 91 47.3
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.4e-12 77.0 89 46.1
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 1.8e-12 76.6 89 46.1
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.8e-12 76.6 95 44.2
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.8e-12 76.6 95 44.2
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 1.8e-12 76.6 83 49.4
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 1.8e-12 76.6 89 46.1
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 1.8e-12 76.6 80 48.8
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 2.4e-12 76.3 92 44.6
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 2.4e-12 76.3 80 48.8
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 3.1e-12 75.9 90 47.8
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 3.1e-12 75.9 83 47.0
RcHm_v2.0_Chr1g0324791 Rosa chinensis HOM05D001374 ORTHO05D004296 3.1e-12 75.9 82 46.3
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 3.1e-12 75.9 90 46.7
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 3.1e-12 75.9 82 47.6
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 4.0e-12 75.5 80 50.0
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 4.0e-12 75.5 80 47.5
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 4.0e-12 75.5 82 48.8
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 5.3e-12 75.1 83 45.8
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 5.3e-12 75.1 82 47.6
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 5.3e-12 75.1 76 50.0
Migut.O00776 Erythranthe guttata HOM05D001374 ORTHO05D004296 5.3e-12 75.1 76 50.0
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 5.3e-12 75.1 89 44.9
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 5.3e-12 75.1 81 48.1
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 5.3e-12 75.1 90 45.6
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 5.3e-12 75.1 89 46.1
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 5.3e-12 75.1 83 44.6
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 6.9e-12 74.7 82 47.6
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 6.9e-12 74.7 83 44.6
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 6.9e-12 74.7 95 44.2
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 6.9e-12 74.7 83 48.2
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 6.9e-12 74.7 90 47.8
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 6.9e-12 74.7 83 44.6
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 6.9e-12 74.7 90 46.7
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 6.9e-12 74.7 83 47.0
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 9.0e-12 74.3 83 48.2
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 9.0e-12 74.3 89 44.9
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 1.2e-11 73.9 82 46.3
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 1.2e-11 73.9 96 43.8
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 1.2e-11 73.9 90 46.7
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 1.2e-11 73.9 95 41.1
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 1.5e-11 73.6 81 45.7
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 1.5e-11 73.6 82 46.3
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 2.0e-11 73.2 83 43.4
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 2.0e-11 73.2 83 47.0
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 2.0e-11 73.2 83 47.0
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 2.0e-11 73.2 80 46.2
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.0e-11 73.2 80 46.2
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.0e-11 73.2 80 46.2
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 2.0e-11 73.2 83 43.4
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.0e-11 73.2 98 43.9
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 2.6e-11 72.8 82 47.6
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 2.6e-11 72.8 82 45.1
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 3.4e-11 72.4 93 46.2
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 3.4e-11 72.4 92 42.4
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 3.4e-11 72.4 92 45.7
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 3.4e-11 72.4 92 44.6
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 3.4e-11 72.4 92 44.6
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 4.5e-11 72.0 78 46.2
SEGI_36555 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 4.5e-11 72.0 81 44.4
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 5.8e-11 71.6 82 46.3
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 5.8e-11 71.6 91 45.1
BcaC01g03668 Brassica carinata HOM05D001374 ORTHO05D013421 9.9e-11 70.9 83 45.8
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 9.9e-11 70.9 78 44.9
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 9.9e-11 70.9 80 46.2
Potri.010G122866 Populus trichocarpa HOM05D001374 ORTHO05D004296 9.9e-11 70.9 80 45.0
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 9.9e-11 70.9 83 42.2
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 1.3e-10 70.5 81 46.9
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 1.3e-10 70.5 80 47.5
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 1.3e-10 70.5 81 46.9
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 1.3e-10 70.5 81 46.9
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 1.3e-10 70.5 77 48.1
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.3e-10 70.5 80 43.8
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 1.3e-10 70.5 92 43.5
MBI16_g23453_MAGBIO Magnolia biondii HOM05D001374 ORTHO05D004296 1.3e-10 70.5 81 42.0
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 1.7e-10 70.1 80 43.8
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.7e-10 70.1 80 43.8
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.7e-10 70.1 98 41.8
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.7e-10 70.1 83 44.6
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 2.2e-10 69.7 78 44.9
Glyma.20G117150 Glycine max HOM05D001374 ORTHO05D004296 2.2e-10 69.7 90 43.3
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 2.2e-10 69.7 92 40.2
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 2.9e-10 69.3 83 44.6
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 2.9e-10 69.3 79 45.6
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 2.9e-10 69.3 83 42.2
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 2.9e-10 69.3 92 40.2
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 3.8e-10 68.9 104 40.4
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 4.9e-10 68.6 98 40.8
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 6.4e-10 68.2 81 43.2
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 6.4e-10 68.2 83 44.6
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 1.1e-09 67.4 105 41.0
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 1.1e-09 67.4 105 41.0
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 1.1e-09 67.4 77 45.5
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 1.9e-09 66.6 83 39.8
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 3.2e-09 65.9 39 71.8
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 9.3e-09 64.3 37 70.3
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 1.6e-08 63.5 93 38.7
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 1.6e-08 63.5 81 40.7
AL6G31230 Arabidopsis lyrata HOM05D001374 ORTHO05D013421 6.0e-08 61.6 86 44.2
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 1.8e-07 60.1 77 45.5
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 2.3e-07 59.7 36 72.2
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 3.9e-07 58.9 58 46.6
AagrBONN_evm.TU.Sc2ySwM_368.245 Anthoceros agrestis HOM05D000436 ORTHO05D000678 3.3e-06 55.8 95 36.8
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 3.3e-06 55.8 81 40.7
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 7.4e-06 54.7 65 44.6


User provided reference genes

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