Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 3.1e-187 658.3 327 100.0
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 3.2e-152 542.0 371 74.4
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.6e-151 539.7 394 70.3
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.0e-130 469.5 327 72.5
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.0e-126 457.2 361 66.5
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 2.3e-121 439.5 361 62.6
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.9e-121 438.7 361 62.3
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.5e-120 436.8 361 62.6
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 2.5e-120 436.0 360 63.1
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.6e-119 433.3 378 61.4
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.1e-119 433.0 361 62.0
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.1e-119 433.0 361 62.0
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 4.0e-118 428.7 361 61.5
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.5e-117 426.8 365 62.7
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 4.4e-117 425.2 362 61.0
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 4.4e-117 425.2 360 60.8
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.7e-116 423.3 362 61.0
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.9e-116 422.5 360 63.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 3.7e-116 422.2 361 61.5
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 4.9e-116 421.8 362 61.9
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 1.1e-115 420.6 364 62.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 5.4e-115 418.3 362 61.0
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 9.2e-115 417.5 362 61.6
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.2e-114 417.2 360 62.2
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.6e-114 416.8 364 60.7
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.6e-114 416.8 363 60.9
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 2.0e-114 416.4 361 59.3
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.7e-114 416.0 361 59.6
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 3.5e-114 415.6 365 61.6
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.5e-114 415.6 365 60.0
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.6e-114 415.2 369 61.5
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.6e-114 415.2 362 61.3
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 7.8e-114 414.5 362 59.7
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.3e-113 413.7 361 60.1
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.7e-113 413.3 361 59.8
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 3.0e-113 412.5 383 57.4
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 3.9e-113 412.1 365 58.6
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 3.9e-113 412.1 361 59.3
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 1.9e-112 409.8 361 59.6
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.5e-112 409.5 362 60.2
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 4.3e-112 408.7 361 58.7
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 4.3e-112 408.7 362 60.2
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-111 407.1 366 62.3
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.2e-111 407.1 362 59.4
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 3.6e-111 405.6 372 59.4
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.6e-111 405.6 364 58.2
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 2.3e-110 402.9 364 60.4
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 3.1e-110 402.5 361 58.2
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 3.1e-110 402.5 361 59.6
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.2e-109 400.6 363 57.6
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.2e-109 400.6 361 58.7
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.6e-109 399.4 368 60.1
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 2.6e-109 399.4 364 60.2
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 9.8e-109 397.5 361 58.4
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 1.3e-108 397.1 363 59.0
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 8.3e-108 394.4 365 57.5
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.1e-106 389.8 356 60.7
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 7.8e-106 387.9 367 56.4
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.3e-105 387.1 362 58.0
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 3.0e-105 386.0 363 57.6
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 8.6e-105 384.4 364 57.4
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 4.3e-104 382.1 365 57.5
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 4.3e-104 382.1 362 57.5
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.3e-104 382.1 360 55.8
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.2e-103 380.6 363 57.0
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.1e-103 379.8 365 57.3
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 2.1e-103 379.8 363 57.6
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.1e-103 379.8 360 55.6
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.8e-103 379.4 360 56.7
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 8.1e-103 377.9 363 56.5
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.4e-102 377.1 358 58.9
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 6.8e-102 374.8 361 55.4
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 2.0e-101 373.2 362 56.4
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 2.6e-101 372.9 358 55.6
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 4.4e-101 372.1 271 69.4
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 9.9e-101 370.9 335 57.9
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.7e-100 370.2 358 55.6
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 3.7e-100 369.0 359 55.7
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 4.9e-100 368.6 362 55.5
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 6.4e-100 368.2 360 56.1
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.4e-99 366.3 358 53.9
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 4.1e-99 365.5 360 55.8
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.1e-99 365.5 360 55.8
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 5.4e-99 365.2 364 54.9
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 5.4e-99 365.2 365 55.9
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.2e-99 364.4 352 59.1
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 3.5e-98 362.5 364 54.4
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 4.6e-98 362.1 371 54.2
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 3.9e-97 359.0 307 60.9
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 3.9e-97 359.0 369 54.5
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 4.3e-96 355.5 385 51.9
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 8.1e-95 351.3 361 52.9
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.4e-94 350.5 368 54.3
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 4.0e-94 349.0 363 55.6
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 6.4e-92 341.7 319 58.3
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.6e-90 337.0 374 50.8
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 7.8e-90 334.7 363 53.7
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.9e-88 330.1 333 55.6
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.9e-88 330.1 302 58.3
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.1e-87 326.6 367 51.0
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 4.8e-87 325.5 367 49.3
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.6e-79 299.3 385 44.4
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.4e-78 296.6 340 49.1
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.6e-74 283.9 357 45.9
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.0e-74 282.0 375 45.6
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.3e-73 280.8 308 50.6
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 5.5e-67 258.8 271 53.5
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 2.7e-66 256.5 198 66.2
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 3.9e-65 252.7 245 58.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.5e-64 250.0 326 47.2
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 8.2e-63 245.0 361 40.7
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.8e-62 243.8 376 39.6
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 5.0e-60 235.7 209 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 3.0e-57 226.5 396 37.1
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 2.8e-55 219.9 161 68.9
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.2e-53 214.5 282 45.4
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.2e-53 214.5 194 57.7
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 7.7e-53 211.8 196 58.7
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 6.9e-46 188.7 129 71.3
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.5e-44 182.2 139 68.3
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.4e-41 174.5 195 52.3
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 6.7e-41 172.2 138 66.7
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 1.7e-39 167.5 173 53.2
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 5.9e-37 159.1 167 52.1
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 8.0e-34 148.7 168 51.2
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.3e-33 147.1 218 40.4
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 6.7e-33 145.6 138 59.4
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.8e-30 137.5 176 42.0
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.2e-26 124.8 114 56.1
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.8e-25 120.9 82 68.3
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.2e-25 119.4 122 56.6
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.4e-24 116.7 122 55.7
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-18 97.8 110 53.6
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.2e-15 87.4 141 42.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 1.1e-14 85.1 113 40.7
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.2e-10 71.6 45 77.8
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.8e-09 67.8 62 54.8
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.8e-06 57.8 101 42.6
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 2.4e-06 57.4 141 31.2


User provided reference genes

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