Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 0.0e+00 1168.7 588 100.0
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 6.8e-286 986.9 623 83.6
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 2.1e-162 576.6 562 58.7
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 1.3e-159 567.4 452 67.0
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.4e-158 563.9 562 57.7
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.2e-158 562.8 446 67.0
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.2e-158 562.8 446 67.0
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 7.1e-158 561.6 562 57.7
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 6.9e-153 545.0 725 46.9
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.9e-152 541.2 446 65.7
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 2.2e-151 540.0 453 64.9
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 2.2e-151 540.0 453 64.9
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 3.8e-151 539.3 449 65.5
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 1.4e-150 537.3 453 64.7
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 1.4e-150 537.3 446 64.6
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.3e-148 530.0 446 65.0
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 1.5e-144 517.3 446 63.9
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.2e-141 507.7 548 54.9
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 2.1e-141 506.9 446 62.6
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 1.5e-139 500.7 446 62.3
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 2.1e-138 496.9 425 63.8
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 1.0e-135 488.0 445 62.2
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 1.4e-134 484.2 539 53.6
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 3.2e-134 483.0 445 61.8
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 4.2e-134 482.6 536 54.3
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 5.5e-134 482.3 437 62.2
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 5.5e-134 482.3 437 62.2
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 2.1e-133 480.3 434 61.3
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 3.9e-132 476.1 445 61.6
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 2.4e-129 466.8 445 60.7
Nn1g10074 Nelumbo nucifera HOM05D001987 ORTHO05D006514 2.9e-127 459.9 292 78.1
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 3.8e-127 459.5 431 60.8
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 3.8e-127 459.5 431 60.8
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-124 450.7 451 57.4
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-124 450.7 451 57.4
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-124 450.7 451 57.4
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-124 450.7 451 57.4
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.8e-124 450.7 451 57.4
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 3.0e-124 449.9 495 54.9
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 3.0e-124 449.9 495 54.9
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 7.4e-123 445.3 292 76.0
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 6.9e-121 438.7 535 51.2
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 9.0e-121 438.3 453 57.0
BraSC159t45730Z Brassica rapa HOM05D001987 ORTHO05D006514 7.7e-120 435.3 406 61.6
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 1.3e-119 434.5 535 51.2
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 2.9e-119 433.3 422 60.4
Sp3g25720 Schrenkiella parvula HOM05D001987 ORTHO05D006514 2.5e-115 420.2 376 62.8
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 4.3e-115 419.5 358 64.8
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 2.2e-114 417.2 431 57.3
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 4.2e-110 402.9 448 54.0
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 1.6e-109 401.0 613 44.0
MBI16_g09478_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.7e-106 391.0 274 72.3
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 2.8e-106 390.2 518 49.4
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 6.5e-103 379.0 275 74.9
BolSC28t60315H Brassica oleracea HOM05D001987 ORTHO05D006514 6.5e-103 379.0 293 69.3
ECA240G1514 Erigeron canadensis HOM05D001987 ORTHO05D006514 8.5e-103 378.6 297 68.0
HanXRQChr14g0433081 Helianthus annuus HOM05D001987 ORTHO05D006514 1.2e-101 374.8 295 68.1
Solyc09g015850.4 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.6e-99 367.1 246 76.0
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 2.9e-95 353.6 303 64.0
CARHR288240 Cardamine hirsuta HOM05D001987 ORTHO05D006514 2.5e-94 350.5 351 58.7
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 4.1e-89 333.2 547 42.6
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 9.1e-89 332.0 300 61.7
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 2.8e-82 310.5 419 49.9
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 2.4e-81 307.4 447 45.6
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 1.0e-79 302.0 447 45.9
Nitab4.5_0009561g0020 Nicotiana tabacum HOM05D001987 ORTHO05D006514 5.9e-72 276.2 284 56.3
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 1.0e-71 275.4 321 53.0
Peaxi162Scf00238g00149 Petunia axillaris HOM05D001987 ORTHO05D006514 1.7e-71 274.6 207 69.6
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 2.5e-70 270.8 261 59.8
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 3.5e-64 250.4 287 53.0
MELO3C028575.2 Cucumis melo HOM05D001987 ORTHO05D006514 7.8e-64 249.2 224 61.2
Ah.10g028680 Amaranthus hybridus HOM05D001987 ORTHO05D006514 6.0e-56 223.0 180 70.6
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 1.9e-54 218.0 349 44.1
arahy.Tifrunner.gnm1.ann1.L3L3JQ Arachis hypogaea HOM05D001987 ORTHO05D006514 3.3e-54 217.2 203 61.1
Lalb_Chr11g0070921 Lupinus albus HOM05D001987 ORTHO05D006514 3.4e-51 207.2 149 72.5
Sopen05g027070 Solanum pennellii HOM05D001987 ORTHO05D006514 1.9e-49 201.4 136 73.5
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 9.2e-49 199.1 212 54.7
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.6e-48 196.8 244 46.3
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.0e-48 196.4 287 46.3
Eucgr.J02744 Eucalyptus grandis HOM05D001987 ORTHO05D006514 2.0e-43 181.4 114 79.8
Nitab4.5_0000334g0030 Nicotiana tabacum HOM05D001987 ORTHO05D006514 5.1e-39 166.8 193 51.8
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 6.6e-39 166.4 404 35.9
BraSC48t46330Z Brassica rapa HOM05D001987 ORTHO05D006514 1.1e-38 165.6 103 81.6
Nitab4.5_0010565g0030 Nicotiana tabacum HOM05D000040 ORTHO05D000759 7.3e-38 162.9 145 57.9
CAN.G1202.8 Capsicum annuum HOM05D001987 ORTHO05D006514 1.9e-33 148.3 90 81.1
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 4.2e-33 147.1 95 80.0
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 2.7e-32 144.4 109 70.6
Dinv35896 Davidia involucrata HOM05D001987 ORTHO05D006514 7.9e-32 142.9 95 77.9
Ah.01g011840 Amaranthus hybridus HOM05D001987 ORTHO05D006514 1.3e-31 142.1 74 98.6
EL10Ac1g01304 Beta vulgaris HOM05D001987 ORTHO05D006514 1.9e-30 138.3 90 74.4
Nitab4.5_0000309g0220 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.8e-29 133.7 87 72.4
Nitab4.5_0009703g0120 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.5e-27 128.6 106 67.0
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 2.4e-25 121.3 174 46.6
Nitab4.5_0000309g0190 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.5e-22 111.3 96 64.6
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.3e-22 110.9 156 46.8
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 5.6e-22 110.2 90 67.8
Nitab4.5_0000334g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 6.9e-20 103.2 138 43.5
Nitab4.5_0011784g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.3e-18 99.0 62 75.8
TPR.G21771 Trifolium pratense HOM05D001987 ORTHO05D006514 1.9e-17 95.1 96 54.2
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.5e-17 93.6 116 49.1
Cpa.g.sc1367.1 Carica papaya HOM05D001987 ORTHO05D006514 3.5e-16 90.9 55 78.2
Solyc05g045770.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.9e-14 85.1 62 66.1
Nitab4.5_0000330g0070 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.5e-14 84.7 63 65.1
Solyc08g045870.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.3e-14 84.0 73 61.6
SHI01961 Sapria himalayana HOM05D001987 ORTHO05D006514 1.3e-13 82.4 157 39.5
Hund27846 Selenicereus undatus HOM05D001987 ORTHO05D004018 3.7e-13 80.9 125 43.2
Solyc12g035815.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.4e-12 78.2 97 43.3
Pp3c2_23480 Physcomitrium patens HOM05D001987 ORTHO05D006514 3.1e-12 77.8 340 26.5
AagrBONN_evm.TU.Sc2ySwM_362.2082 Anthoceros agrestis HOM05D001987 ORTHO05D006514 1.5e-11 75.5 252 30.2
Solyc05g045822.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.0e-11 75.1 51 66.7
Peaxi162Scf00360g00815 Petunia axillaris HOM05D001987 ORTHO05D006514 5.9e-11 73.6 82 52.4
Solyc05g045920.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.2e-10 71.6 44 77.3
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 2.2e-10 71.6 96 39.6
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 2.2e-10 71.6 96 39.6
Lalb_Chr19g0127771 Lupinus albus HOM05D001987 ORTHO05D006514 2.9e-10 71.2 54 64.8
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 5.0e-10 70.5 41 82.9
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 5.0e-10 70.5 54 66.7
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 9.3e-09 66.2 96 36.5
Solyc05g045824.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.3e-09 66.2 61 57.4
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.1e-08 65.1 95 46.3
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 2.1e-08 65.1 119 37.0
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 7.9e-08 63.2 96 35.4
Nitab4.5_0007962g0010 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.0e-07 62.8 48 70.8
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.9e-07 60.8 113 31.9
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 3.9e-07 60.8 96 34.4
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 3.9e-07 60.8 113 31.9
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.9e-07 60.8 113 31.9
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.9e-07 60.8 113 31.9
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.9e-07 60.8 113 31.9
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 3.9e-07 60.8 113 31.9
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 5.1e-07 60.5 95 32.6
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 5.1e-07 60.5 95 32.6
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 5.1e-07 60.5 95 32.6
AUR62043874 Chenopodium quinoa HOM05D013629 ORTHO05D010811 6.7e-07 60.1 92 48.9
BraSC48t46240Z Brassica rapa HOM05D001987 ORTHO05D006514 8.7e-07 59.7 59 59.3
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 8.7e-07 59.7 95 32.6
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.1e-06 59.3 95 34.7
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 1.5e-06 58.9 113 31.0
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.5e-06 58.9 113 31.0
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.9e-06 58.5 95 34.7
Solyc12g035820.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.9e-06 58.5 150 34.0
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 2.5e-06 58.2 99 34.3
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.7e-06 57.0 95 32.6
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.7e-06 57.0 95 32.6
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 5.7e-06 57.0 99 33.3
SHI01964 Sapria himalayana HOM05D001987 ORTHO05D006514 5.7e-06 57.0 57 57.9
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.7e-06 57.0 95 34.7
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 7.4e-06 56.6 95 32.6


User provided reference genes

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