Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.9e-213 744.6 384 100.0
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 4.3e-79 299.3 296 57.8
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.6e-76 290.0 296 56.8
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 7.8e-73 278.5 375 46.9
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 7.1e-50 202.2 372 37.4
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.9e-42 177.6 306 41.2
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.8e-40 171.0 302 39.4
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 3.9e-40 169.9 321 38.6
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 7.4e-39 165.6 298 40.6
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 9.6e-39 165.2 307 40.7
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.3e-38 164.9 342 38.0
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 2.6e-36 157.1 313 38.3
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 3.8e-35 153.3 268 40.7
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.5e-34 150.6 389 31.4
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 7.2e-34 149.1 315 36.5
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 2.1e-33 147.5 262 39.7
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.1e-33 147.5 308 34.1
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 2.7e-33 147.1 269 38.7
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 6.1e-33 146.0 322 34.8
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.3e-32 144.8 301 35.9
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.8e-32 144.4 222 40.5
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 2.5e-31 140.6 309 35.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 9.7e-31 138.7 258 37.2
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 9.7e-31 138.7 306 35.9
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.8e-30 137.1 281 37.0
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 4.8e-30 136.3 253 38.7
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 4.8e-30 136.3 318 35.8
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 8.2e-30 135.6 250 37.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.1e-29 135.2 273 35.9
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.8e-29 134.4 213 41.8
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.8e-29 134.4 228 39.0
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.4e-29 134.0 318 33.0
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 9.1e-29 132.1 232 40.1
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.2e-28 131.7 192 43.2
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 3.4e-28 130.2 273 35.5
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 8.5e-27 125.6 315 32.7
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 1.6e-25 121.3 297 36.4
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 6.1e-25 119.4 164 46.3
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.4e-24 118.2 175 40.6
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 2.6e-23 114.0 314 31.8
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 3.3e-23 113.6 264 31.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 5.7e-23 112.8 306 31.4
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 7.4e-23 112.5 316 31.6
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.3e-22 111.7 302 29.8
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.3e-22 111.7 302 29.8
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 8.2e-22 109.0 308 32.5
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.4e-21 108.2 305 30.8
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 2.4e-21 107.5 323 30.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 5.3e-21 106.3 308 29.2
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 9.1e-21 105.5 303 29.4
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.2e-20 105.1 298 28.5
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.2e-20 105.1 299 26.4
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 4.5e-20 103.2 305 30.8
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.1e-18 98.6 321 27.4
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 4.7e-17 93.2 294 28.9
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 8.8e-16 89.0 148 37.8
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.4e-13 80.9 87 43.7
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.1e-13 80.5 82 47.6
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.1e-13 80.5 82 47.6
AUR62026659 Chenopodium quinoa HOM05D008124 ORTHO05D004072 5.3e-13 79.7 66 60.6
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.2e-12 78.6 219 28.8
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 1.2e-12 78.6 191 32.5
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 2.6e-12 77.4 285 25.3
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 1.5e-10 71.6 148 33.1
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.5e-10 70.9 171 33.3
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 3.2e-10 70.5 247 30.8
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 3.2e-10 70.5 95 40.0
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.2e-10 70.5 88 40.9
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.2e-10 70.1 87 39.1
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 7.2e-10 69.3 117 32.5
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.2e-10 69.3 88 39.8
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.2e-09 68.6 86 39.5
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 2.1e-09 67.8 165 32.7
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 2.7e-09 67.4 193 30.1
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.8e-08 64.7 99 35.4
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 2.3e-08 64.3 92 34.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 2.3e-08 64.3 168 31.0
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.0e-08 63.9 92 37.0
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.0e-08 63.9 98 36.7
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 4.0e-08 63.5 88 35.2
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.2e-08 63.2 96 36.5
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 5.2e-08 63.2 86 37.2
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.6e-07 60.8 89 36.0
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 2.6e-07 60.8 59 49.2
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 2.6e-07 60.8 59 49.2
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 3.3e-07 60.5 92 34.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 3.3e-07 60.5 93 32.3
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 3.3e-07 60.5 52 50.0
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 4.4e-07 60.1 185 28.1
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 5.7e-07 59.7 96 35.4
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 5.7e-07 59.7 188 28.2
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 5.7e-07 59.7 97 39.2
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 7.5e-07 59.3 91 35.2
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 7.5e-07 59.3 88 31.8
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 7.5e-07 59.3 178 28.7
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 7.5e-07 59.3 90 33.3
FvH4_3g06761 Fragaria vesca HOM05D010406 ORTHO05D020627 7.5e-07 59.3 99 33.3
FAN16G3699 Fragaria x ananassa HOM05D010406 ORTHO05D020627 7.5e-07 59.3 99 33.3
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 9.7e-07 58.9 90 32.2
FAN11G3823 Fragaria x ananassa HOM05D010406 ORTHO05D020627 1.3e-06 58.5 99 33.3
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.7e-06 58.2 74 37.8
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 2.2e-06 57.8 179 29.1
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.8e-06 57.4 186 26.9
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 2.8e-06 57.4 101 38.6
FAN25G0760 Fragaria x ananassa HOM05D010406 ORTHO05D020627 2.8e-06 57.4 97 34.0
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 3.7e-06 57.0 181 32.6
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.8e-06 56.6 58 43.1
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 4.8e-06 56.6 179 27.9
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 4.8e-06 56.6 94 38.3
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 6.3e-06 56.2 91 31.9
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 6.3e-06 56.2 91 31.9
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 6.3e-06 56.2 86 32.6
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 8.2e-06 55.8 104 32.7


User provided reference genes

Program Settings