Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g007090 Amaranthus hybridus HOM05D002048 ORTHO05D002146 8.0e-149 530.4 268 100.0
AUR62027023 Chenopodium quinoa HOM05D002048 ORTHO05D002146 4.2e-65 252.3 217 64.1
AUR62030865 Chenopodium quinoa HOM05D002048 ORTHO05D002146 1.3e-58 230.7 198 65.2
EL10Ac9g22179 Beta vulgaris HOM05D002048 ORTHO05D002146 8.2e-53 211.5 219 55.7
Hund00421 Selenicereus undatus HOM05D002048 ORTHO05D002146 1.1e-38 164.5 222 49.1
Nn6g34523 Nelumbo nucifera HOM05D002048 ORTHO05D002146 1.0e-26 124.8 222 40.1
Sc18g0007360 Simmondsia chinensis HOM05D002048 ORTHO05D002146 1.0e-26 124.8 218 39.9
Thecc.08G084800 Theobroma cacao HOM05D002048 ORTHO05D002146 9.4e-25 118.2 221 38.5
Duzib116G0418 Durio zibethinus HOM05D002048 ORTHO05D002146 3.6e-24 116.3 220 37.7
Thecc.02G119900 Theobroma cacao HOM05D002048 ORTHO05D002146 4.0e-23 112.8 229 36.2
Prupe.1G419400 Prunus persica HOM05D002048 ORTHO05D002146 2.0e-22 110.5 222 38.3
Lj9A337T46 Lonicera japonica HOM05D002048 ORTHO05D002146 1.7e-21 107.5 227 36.6
Sc26g0004230 Simmondsia chinensis HOM05D002048 ORTHO05D002146 2.8e-21 106.7 206 35.0
ATR0564G474 Amborella trichopoda HOM05D002048 ORTHO05D002146 6.3e-21 105.5 215 37.2
Duzib132G0903 Durio zibethinus HOM05D002048 ORTHO05D002146 1.8e-20 104.0 213 38.5
Haze_22392 Corylus avellana HOM05D002048 ORTHO05D002146 4.1e-20 102.8 219 37.0
TAR381G0254 Trochodendron aralioides HOM05D002048 ORTHO05D002146 5.4e-20 102.4 218 34.4
Cfa004700 Carpinus fangiana HOM05D002048 ORTHO05D002146 3.5e-19 99.8 220 32.7
Glyma.20G135800 Glycine max HOM05D002048 ORTHO05D002146 3.5e-19 99.8 226 36.3
Haze_22400 Corylus avellana HOM05D002048 ORTHO05D002146 5.9e-19 99.0 221 35.7
QL12p038612 Quercus lobata HOM05D002048 ORTHO05D002146 5.9e-19 99.0 221 37.6
Manes.10G086900 Manihot esculenta HOM05D002048 ORTHO05D002146 1.0e-18 98.2 221 33.5
Potri.001G289800 Populus trichocarpa HOM05D002048 ORTHO05D002146 1.0e-18 98.2 228 32.9
Haze_10301 Corylus avellana HOM05D002048 ORTHO05D002146 1.3e-18 97.8 220 32.3
HPP92_012932 Vanilla planifolia HOM05D002048 ORTHO05D002146 2.3e-18 97.1 218 36.7
Lalb_Chr02g0144901 Lupinus albus HOM05D002048 ORTHO05D002146 3.8e-18 96.3 218 34.4
Lalb_Chr06g0164981 Lupinus albus HOM05D002048 ORTHO05D002146 8.6e-18 95.1 217 38.2
Phvul.007G047100 Phaseolus vulgaris HOM05D002048 ORTHO05D002146 8.6e-18 95.1 221 35.3
Actinidia02440 Actinidia chinensis HOM05D002048 ORTHO05D002146 1.9e-17 94.0 214 33.2
VMungo0720G0973 Vigna mungo HOM05D002048 ORTHO05D002146 1.9e-17 94.0 227 35.7
COL.COLO4_28463 Corchorus olitorius HOM05D002048 ORTHO05D002146 2.5e-17 93.6 221 33.5
MD08G1078500 Malus domestica HOM05D002048 ORTHO05D002146 3.3e-17 93.2 218 37.2
Nn5g30660 Nelumbo nucifera HOM05D002048 ORTHO05D002146 3.3e-17 93.2 222 34.7
Lj5g0012181 Lotus japonicus HOM05D002048 ORTHO05D002146 9.5e-17 91.7 227 34.4
Gohir.A04G118000 Gossypium hirsutum HOM05D002048 ORTHO05D002146 1.6e-16 90.9 207 34.3
Cc02_g20050 Coffea canephora HOM05D002048 ORTHO05D002146 2.8e-16 90.1 219 34.2
CiPaw.05G020700 Carya illinoinensis HOM05D002048 ORTHO05D002146 4.7e-16 89.4 221 32.6
Gohir.D06G022600 Gossypium hirsutum HOM05D002048 ORTHO05D002146 6.1e-16 89.0 219 33.3
Gorai.010G027200 Gossypium raimondii HOM05D002048 ORTHO05D002146 6.1e-16 89.0 219 33.3
Gohir.D04G159700 Gossypium hirsutum HOM05D002048 ORTHO05D002146 1.0e-15 88.2 210 33.8
Gorai.012G147100 Gossypium raimondii HOM05D002048 ORTHO05D002146 1.0e-15 88.2 210 33.8
Atru.chr5.2293 Acer truncatum HOM05D002048 ORTHO05D002146 1.4e-15 87.8 249 30.9
TWI56G0554 Tripterygium wilfordii HOM05D002048 ORTHO05D002146 3.0e-15 86.7 197 34.5
Ciclev10027741m.g Citrus clementina HOM05D002048 ORTHO05D002146 4.0e-15 86.3 213 33.8
MD05G1105600 Malus domestica HOM05D002048 ORTHO05D002146 5.2e-15 85.9 214 34.1
MD15G1065300 Malus domestica HOM05D002048 ORTHO05D002146 6.8e-15 85.5 213 34.7
Aqoxy1G00259 Aquilegia oxysepala HOM05D002048 ORTHO05D002146 8.9e-15 85.1 205 32.2
vmacro21418 Vaccinium macrocarpon HOM05D002048 ORTHO05D002146 1.2e-14 84.7 213 35.2
CSS0035447 Camellia sinensis var. sinensis HOM05D002048 ORTHO05D002146 2.0e-14 84.0 214 32.7
Ciclev10027732m.g Citrus clementina HOM05D002048 ORTHO05D002146 2.6e-14 83.6 227 31.3
Actinidia19296 Actinidia chinensis HOM05D002048 ORTHO05D002146 3.7e-13 79.7 190 32.6
Prupe.8G150300 Prunus persica HOM05D002048 ORTHO05D002146 4.9e-13 79.3 214 32.2
SEGI_18842 Sequoiadendron giganteum HOM05D002048 ORTHO05D002146 4.9e-13 79.3 227 32.6
arahy.Tifrunner.gnm1.ann1.S90AI0 Arachis hypogaea HOM05D002048 ORTHO05D002146 1.1e-12 78.2 203 34.5
THA.LOC104807020 Tarenaya hassleriana HOM05D002048 ORTHO05D002146 5.4e-12 75.9 202 33.7
PSO170G6386 Papaver somniferum HOM05D002048 ORTHO05D002146 7.0e-12 75.5 217 35.5
Hma1.2p1_0661F.1_g198110 Hydrangea macrophylla HOM05D002048 ORTHO05D002146 9.2e-12 75.1 197 34.0
Glyma.14G089078 Glycine max HOM05D002048 ORTHO05D002146 1.2e-11 74.7 200 33.0
arahy.Tifrunner.gnm1.ann1.ZAPI4Q Arachis hypogaea HOM05D002048 ORTHO05D002146 1.6e-11 74.3 203 34.0
Cfa013740 Carpinus fangiana HOM05D002048 ORTHO05D002146 1.6e-11 74.3 160 35.0
PSO017G4256 Papaver somniferum HOM05D002048 ORTHO05D002146 2.0e-11 73.9 220 33.6
RhsimUnG0041000 Rhododendron simsii HOM05D002048 ORTHO05D002146 2.7e-11 73.6 213 31.0
RhsimUnG0123000 Rhododendron simsii HOM05D002048 ORTHO05D002146 2.7e-11 73.6 213 31.0
Gohir.A06G025500 Gossypium hirsutum HOM05D002048 ORTHO05D002146 1.0e-10 71.6 207 33.3
arahy.Tifrunner.gnm1.ann1.QJHX3I Arachis hypogaea HOM05D002048 ORTHO05D002146 1.3e-10 71.2 208 33.2
Cpa.g.c35142 Carica papaya HOM05D002048 ORTHO05D002146 2.3e-10 70.5 109 37.6
FAN24G2311 Fragaria x ananassa HOM05D002048 ORTHO05D002146 1.5e-09 67.8 214 30.8
CsaV3_4G000090 Cucumis sativus L. HOM05D002048 ORTHO05D002146 1.9e-09 67.4 219 32.0
Eucgr.F02226 Eucalyptus grandis HOM05D002048 ORTHO05D002146 1.9e-09 67.4 216 32.9
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 2.5e-09 67.0 206 32.0
FvH4_2g03330 Fragaria vesca HOM05D002048 ORTHO05D002146 3.3e-09 66.6 214 30.4
RcHm_v2.0_Chr6g0309991 Rosa chinensis HOM05D002048 ORTHO05D002146 5.6e-09 65.9 209 30.6
Hund05277 Selenicereus undatus HOM05D002048 ORTHO05D002146 5.6e-09 65.9 184 34.8
Ca_06979_v3 Cicer arietinum L. HOM05D002048 ORTHO05D002146 7.3e-09 65.5 201 31.8
EL10Ac1g01692 Beta vulgaris HOM05D002048 ORTHO05D002146 9.5e-09 65.1 198 30.8
Psat6g017320 Pisum sativum HOM05D002048 ORTHO05D002146 1.2e-08 64.7 195 30.3
Medtr1g017520 Medicago truncatula HOM05D002048 ORTHO05D002146 1.6e-08 64.3 205 29.8
vmacro01946 Vaccinium macrocarpon HOM05D002048 ORTHO05D002146 2.1e-08 63.9 188 32.4
AT1G44910 Arabidopsis thaliana HOM05D002048 ORTHO05D002146 2.8e-08 63.5 200 32.5
Sed0000428 Sechium edule HOM05D002048 ORTHO05D002146 2.8e-08 63.5 211 29.9
ClCG10G010050 Citrullus lanatus HOM05D002048 ORTHO05D002146 3.6e-08 63.2 222 32.0
FAN27G2083 Fragaria x ananassa HOM05D002048 ORTHO05D002146 3.6e-08 63.2 214 29.9
FAN20G2095 Fragaria x ananassa HOM05D002048 ORTHO05D002146 4.7e-08 62.8 214 29.9
FAN15G2976 Fragaria x ananassa HOM05D002048 ORTHO05D002146 1.4e-07 61.2 214 29.4
CANSAT25G3132 Cannabis sativa HOM05D002048 ORTHO05D002146 8.9e-07 58.5 206 29.1
CANSAT56G3433 Cannabis sativa HOM05D002048 ORTHO05D002146 1.5e-06 57.8 208 27.4
Actinidia10220 Actinidia chinensis HOM05D002048 ORTHO05D002146 2.6e-06 57.0 142 33.8
RcHm_v2.0_Chr6g0248471 Rosa chinensis HOM05D002048 ORTHO05D002146 2.6e-06 57.0 221 29.4
Aa31LG7G10080 Aethionema arabicum HOM05D002048 ORTHO05D002146 4.4e-06 56.2 209 34.0
HPP92_002487 Vanilla planifolia HOM05D002048 ORTHO05D002146 9.8e-06 55.1 214 26.2


User provided reference genes

Program Settings