Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia36715 Actinidia chinensis HOM05D000835 ORTHO05D004825 2.0e-73 279.3 167 100.0
Actinidia31056 Actinidia chinensis HOM05D000835 ORTHO05D004825 4.5e-33 145.2 110 72.7
vmacro10387 Vaccinium macrocarpon HOM05D000835 ORTHO05D004825 5.2e-21 105.1 76 76.3
Hma1.2p1_0518F.1_g171155 Hydrangea macrophylla HOM05D000835 ORTHO05D004825 5.7e-20 101.7 74 70.3
Rhsim09G0132100 Rhododendron simsii HOM05D000835 ORTHO05D004825 5.7e-20 101.7 76 75.0
CsaV3_2G003560 Cucumis sativus L. HOM05D000835 ORTHO05D004825 2.4e-18 96.3 74 62.2
Potri.018G114900 Populus trichocarpa HOM05D000835 ORTHO05D004825 2.4e-18 96.3 74 64.9
Manes.14G137900 Manihot esculenta HOM05D000835 ORTHO05D004825 4.1e-18 95.5 74 66.2
CiPaw.16G118100 Carya illinoinensis HOM05D000835 ORTHO05D004825 5.3e-18 95.1 74 64.9
TWI34G0205 Tripterygium wilfordii HOM05D000835 ORTHO05D004825 7.0e-18 94.7 74 63.5
Nitab4.5_0001555g0120 Nicotiana tabacum HOM05D000835 ORTHO05D004825 1.2e-17 94.0 74 67.6
MD15G1160400 Malus domestica HOM05D000835 ORTHO05D004825 4.5e-17 92.0 76 64.5
Potri.006G190600 Populus trichocarpa HOM05D000835 ORTHO05D004825 4.5e-17 92.0 74 60.8
Cpa.g.sc7.82 Carica papaya HOM05D000835 ORTHO05D004825 5.9e-17 91.7 74 67.6
Sed0019814 Sechium edule HOM05D000835 ORTHO05D004825 5.9e-17 91.7 74 62.2
THA.LOC104815391 Tarenaya hassleriana HOM05D000835 ORTHO05D004825 7.7e-17 91.3 74 64.9
Nitab4.5_0012668g0020 Nicotiana tabacum HOM05D000835 ORTHO05D004825 1.7e-16 90.1 74 67.6
Solyc07g007210.3 Solanum lycopersicum HOM05D000835 ORTHO05D004825 2.2e-16 89.7 74 64.9
Sopen07g003260 Solanum pennellii HOM05D000835 ORTHO05D004825 2.2e-16 89.7 74 64.9
CAN.G518.24 Capsicum annuum HOM05D000835 ORTHO05D004825 2.9e-16 89.4 74 64.9
A08p36080 Brassica napus HOM05D000835 ORTHO05D004825 3.8e-16 89.0 75 65.3
C08p02430 Brassica napus HOM05D000835 ORTHO05D004825 3.8e-16 89.0 75 65.3
BolC8t47034H Brassica oleracea HOM05D000835 ORTHO05D004825 3.8e-16 89.0 75 65.3
CSS0040726 Camellia sinensis var. sinensis HOM05D000835 ORTHO05D004825 3.8e-16 89.0 74 63.5
Migut.J00851 Erythranthe guttata HOM05D000835 ORTHO05D004825 3.8e-16 89.0 74 60.8
TWI63G1100 Tripterygium wilfordii HOM05D000835 ORTHO05D004825 3.8e-16 89.0 74 62.2
BraA08t35515Z Brassica rapa HOM05D000835 ORTHO05D004825 6.5e-16 88.2 75 65.3
BcaC07g42078 Brassica carinata HOM05D000835 ORTHO05D004825 1.5e-15 87.0 95 57.9
Thhalv10006688m.g Eutrema salsugineum HOM05D000835 ORTHO05D004825 1.5e-15 87.0 74 63.5
BcaB03g13430 Brassica carinata HOM05D000835 ORTHO05D004825 3.2e-15 85.9 74 60.8
AL1G16200 Arabidopsis lyrata HOM05D000835 ORTHO05D004825 5.5e-15 85.1 74 60.8
BcaB02g08933 Brassica carinata HOM05D000835 ORTHO05D004825 5.5e-15 85.1 74 62.2
DCAR_014922 Daucus carota HOM05D000835 ORTHO05D004825 7.2e-15 84.7 74 59.5
MELO3C004440.2 Cucumis melo HOM05D000835 ORTHO05D004825 9.4e-15 84.3 74 56.8
ClCG02G017230 Citrullus lanatus HOM05D000835 ORTHO05D004825 1.2e-14 84.0 115 44.3
AT1G06220 Arabidopsis thaliana HOM05D000835 ORTHO05D004825 1.6e-14 83.6 74 58.1
ECA234G0529 Erigeron canadensis HOM05D000835 ORTHO05D004825 2.1e-14 83.2 76 60.5
Nitab4.5_0001021g0120 Nicotiana tabacum HOM05D000835 ORTHO05D004825 2.1e-14 83.2 74 62.2
C08p51330 Brassica napus HOM05D000835 ORTHO05D004825 2.7e-14 82.8 77 62.3
BolC8t52659H Brassica oleracea HOM05D000835 ORTHO05D004825 2.7e-14 82.8 77 62.3
Atru.chr1.3223 Acer truncatum HOM05D000835 ORTHO05D004825 3.6e-14 82.4 74 56.8
CARHR005750 Cardamine hirsuta HOM05D000835 ORTHO05D004825 3.6e-14 82.4 74 60.8
PGR102G0588 Punica granatum HOM05D000835 ORTHO05D004825 3.6e-14 82.4 74 56.8
FAN10G2975 Fragaria x ananassa HOM05D000835 ORTHO05D004825 4.7e-14 82.0 74 62.2
Gohir.D09G095400 Gossypium hirsutum HOM05D000835 ORTHO05D004825 4.7e-14 82.0 76 61.8
Peaxi162Scf00391g00213 Petunia axillaris HOM05D000835 ORTHO05D004825 4.7e-14 82.0 75 60.0
Gohir.D04G153601 Gossypium hirsutum HOM05D000835 ORTHO05D004825 6.1e-14 81.6 76 60.5
Gohir.D13G227300 Gossypium hirsutum HOM05D000835 ORTHO05D004825 6.1e-14 81.6 76 60.5
Gorai.013G257800 Gossypium raimondii HOM05D000835 ORTHO05D004825 6.1e-14 81.6 76 60.5
MD02G1013600 Malus domestica HOM05D000835 ORTHO05D004825 8.0e-14 81.3 74 58.1
PSO017G2591 Papaver somniferum HOM05D000835 ORTHO05D004825 8.0e-14 81.3 76 60.5
PSO063G0608 Papaver somniferum HOM05D000835 ORTHO05D004825 8.0e-14 81.3 76 60.5
SGA_v2.0_scaffold14G07042 Striga asiatica HOM05D000835 ORTHO05D004825 8.0e-14 81.3 123 43.9
Aqoxy2G03921 Aquilegia oxysepala HOM05D000835 ORTHO05D004825 1.0e-13 80.9 75 58.7
QL02p037156 Quercus lobata HOM05D000835 ORTHO05D004825 1.0e-13 80.9 74 59.5
Sp1g05030 Schrenkiella parvula HOM05D000835 ORTHO05D004825 1.0e-13 80.9 75 62.7
Cfa020900 Carpinus fangiana HOM05D000835 ORTHO05D004825 1.8e-13 80.1 74 55.4
Gohir.A09G095700 Gossypium hirsutum HOM05D000835 ORTHO05D004825 1.8e-13 80.1 76 60.5
Haze_20239 Corylus avellana HOM05D000835 ORTHO05D004825 2.3e-13 79.7 78 53.8
Gorai.012G140400 Gossypium raimondii HOM05D000835 ORTHO05D004825 2.3e-13 79.7 76 59.2
COL.COLO4_19855 Corchorus olitorius HOM05D000835 ORTHO05D004825 3.0e-13 79.3 76 59.2
QL02p091140 Quercus lobata HOM05D000835 ORTHO05D004825 3.0e-13 79.3 74 56.8
PGSC0003DMG400030733 Solanum tuberosum HOM05D000835 ORTHO05D004825 5.2e-13 78.6 74 60.8
Aa31LG9G5170 Aethionema arabicum HOM05D000835 ORTHO05D004825 8.8e-13 77.8 74 56.8
Duzib168G1623 Durio zibethinus HOM05D000835 ORTHO05D004825 8.8e-13 77.8 76 59.2
Eucgr.C04091 Eucalyptus grandis HOM05D000835 ORTHO05D004825 2.0e-12 76.6 77 57.1
TAR626G0627 Trochodendron aralioides HOM05D000835 ORTHO05D004825 2.6e-12 76.3 74 54.1
A06p43370 Brassica napus HOM05D000835 ORTHO05D004825 3.3e-12 75.9 74 56.8
BraA06t27223Z Brassica rapa HOM05D000835 ORTHO05D004825 3.3e-12 75.9 74 56.8
SalBow3G2439 Salvia bowleyana HOM05D000835 ORTHO05D004825 4.4e-12 75.5 74 54.1
Ciclev10007342m.g Citrus clementina HOM05D000835 ORTHO05D004825 1.3e-11 73.9 75 54.7
Thecc.09G282500 Theobroma cacao HOM05D000835 ORTHO05D004825 1.7e-11 73.6 76 56.6
FvH4_7g03790 Fragaria vesca HOM05D000835 ORTHO05D004825 2.2e-11 73.2 74 55.4
FAN06G2977 Fragaria x ananassa HOM05D000835 ORTHO05D004825 2.2e-11 73.2 74 55.4
Carub.0006s3241 Capsella rubella HOM05D000835 ORTHO05D004825 3.7e-11 72.4 75 57.3
MSTRG.21107 Avicennia marina HOM05D000835 ORTHO05D004825 4.8e-11 72.0 74 52.7
CANSAT01G0568 Cannabis sativa HOM05D000835 ORTHO05D004825 4.8e-11 72.0 74 52.7
CDE02G4178 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 6.3e-11 71.6 80 51.2
FAN03G3509 Fragaria x ananassa HOM05D000835 ORTHO05D004825 8.2e-11 71.2 74 54.1
MBI17_g08177_MAGBIO Magnolia biondii HOM05D000835 ORTHO05D004825 8.2e-11 71.2 75 49.3
FAN01G0835 Fragaria x ananassa HOM05D000835 ORTHO05D004825 1.4e-10 70.5 74 54.1
Dinv37182 Davidia involucrata HOM05D000835 ORTHO05D004825 1.8e-10 70.1 59 57.6
Sabra18G0097700 Salix brachista HOM05D000835 ORTHO05D004825 2.4e-10 69.7 74 51.4
Lj7A447G15 Lonicera japonica HOM05D000835 ORTHO05D004825 3.1e-10 69.3 74 52.7
Lj7A450G51 Lonicera japonica HOM05D000835 ORTHO05D004825 3.1e-10 69.3 74 52.7
Cc05_g02310 Coffea canephora HOM05D000835 ORTHO05D004825 5.3e-10 68.6 75 53.3
Lsat_1_v5_gn_5_94361 Lactuca sativa HOM05D000835 ORTHO05D004825 5.3e-10 68.6 74 50.0
Prupe.3G036300 Prunus persica HOM05D000835 ORTHO05D004825 3.5e-09 65.9 74 51.4
Gorai.006G112100 Gossypium raimondii HOM05D000835 ORTHO05D004825 7.7e-09 64.7 75 52.0
RcHm_v2.0_Chr2g0127751 Rosa chinensis HOM05D000835 ORTHO05D004825 7.7e-09 64.7 74 51.4
TPR.G15808 Trifolium pratense HOM05D000835 ORTHO05D004825 1.3e-08 63.9 81 55.6
Oeu012220.1 Olea europaea HOM05D000835 ORTHO05D004825 1.7e-08 63.5 65 55.4
Hund26921 Selenicereus undatus HOM05D000835 ORTHO05D004825 1.7e-08 63.5 68 52.9
Sc23g0003990 Simmondsia chinensis HOM05D000835 ORTHO05D004825 3.8e-08 62.4 83 43.4
Lj4g0000935 Lotus japonicus HOM05D000835 ORTHO05D004825 8.5e-08 61.2 78 48.7
unitig_747.g21982 Utricularia gibba HOM05D000835 ORTHO05D004825 8.5e-08 61.2 74 44.6
CDE02G3825 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 1.1e-07 60.8 81 44.4
RcHm_v2.0_Chr1g0327101 Rosa chinensis HOM05D000835 ORTHO05D004825 1.9e-07 60.1 74 48.6
HPP92_020496 Vanilla planifolia HOM05D000835 ORTHO05D004825 1.9e-07 60.1 72 48.6
HPP92_020500 Vanilla planifolia HOM05D000835 ORTHO05D004825 1.9e-07 60.1 72 48.6
Ca_21619_v3 Cicer arietinum L. HOM05D000835 ORTHO05D004825 5.5e-07 58.5 76 46.1
arahy.Tifrunner.gnm1.ann1.FP9NT8 Arachis hypogaea HOM05D000835 ORTHO05D004825 7.2e-07 58.2 75 50.7
Gohir.A13G222500 Gossypium hirsutum HOM05D000835 ORTHO05D004825 9.4e-07 57.8 76 44.7
Medtr4g116430 Medicago truncatula HOM05D000835 ORTHO05D004825 2.7e-06 56.2 66 57.6
GSVIVG01012881001 Vitis vinifera HOM05D000835 ORTHO05D004825 4.7e-06 55.5 65 46.2
Psat4g032760 Pisum sativum HOM05D000835 ORTHO05D004825 6.1e-06 55.1 66 51.5


User provided reference genes

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