Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 6.9e-110 400.6 194 100.0
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 7.6e-101 370.5 225 83.1
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.1e-99 366.7 194 90.2
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 7.2e-99 364.0 194 91.2
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 9.7e-96 353.6 194 87.1
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 1.3e-95 353.2 193 87.0
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 85.6
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.8e-95 352.1 194 87.1
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 3.7e-95 351.7 194 85.6
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 85.1
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 85.6
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 83.0
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 84.0
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 84.5
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 83.5
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 83.5
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 84.0
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 84.5
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 83.5
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 84.0
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 84.5
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 84.0
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 84.0
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 83.0
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 83.0
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 1.9e-91 339.3 188 84.0
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 83.5
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 82.5
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 82.0
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 83.0
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 82.5
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 82.5
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 83.5
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 82.0
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 82.5
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 7.2e-91 337.4 194 81.4
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 7.2e-91 337.4 194 81.4
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 7.2e-91 337.4 194 81.4
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 84.0
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 81.4
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 3.6e-90 335.1 200 79.5
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 82.5
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.0e-89 333.6 194 80.9
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 81.4
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 81.4
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 81.4
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 78.9
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 79.4
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.3e-89 332.4 214 75.2
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 78.9
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 82.5
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 5.1e-89 331.3 214 75.2
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 6.7e-89 330.9 214 76.2
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 80.4
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 80.9
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 8.8e-89 330.5 194 82.0
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 79.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 2.0e-88 329.3 194 79.9
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 80.4
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.9
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 80.4
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 77.3
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 79.9
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 79.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.7e-87 326.2 195 81.0
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 79.9
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 79.4
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.1e-86 323.6 187 80.2
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 3.1e-86 322.0 187 79.7
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 5.3e-86 321.2 194 77.8
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.2e-85 320.1 210 73.3
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 77.8
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 2.6e-85 318.9 194 80.4
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 4.5e-85 318.2 178 84.3
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 7.7e-85 317.4 235 68.1
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 76.8
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 76.8
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 76.8
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 1.7e-84 316.2 194 76.8
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 2.2e-84 315.8 194 76.3
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 3.8e-84 315.1 194 76.3
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 6.5e-84 314.3 174 86.8
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 8.5e-84 313.9 194 76.8
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.5e-83 312.4 194 76.8
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.5e-83 312.4 194 76.8
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.5e-83 312.4 194 76.8
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 3.2e-83 312.0 274 62.0
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 7.2e-83 310.8 194 76.3
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 3.6e-82 308.5 194 75.8
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 6.7e-81 304.3 194 74.2
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.7e-79 299.7 191 75.9
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 4.8e-79 298.1 194 74.2
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 5.3e-78 294.7 162 85.2
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 73.7
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 9.1e-78 293.9 297 53.9
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 4.5e-77 291.6 176 78.4
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 1.7e-76 289.7 210 68.1
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 3.8e-76 288.5 193 66.8
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.5e-75 286.6 194 68.0
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.5e-75 285.8 194 68.0
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 3.2e-75 285.4 192 68.8
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 7.2e-75 284.3 283 55.5
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.1e-74 282.7 160 83.8
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 3.6e-74 282.0 195 66.7
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 1.8e-73 279.6 161 82.0
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 2.7e-69 265.8 172 69.2
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 7.2e-59 231.1 120 90.0
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.6e-58 229.9 120 87.5
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 3.6e-58 228.8 120 89.2
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.8e-55 219.2 134 79.1
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 1.4e-54 216.9 178 59.0
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 3.3e-51 205.7 123 79.7
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.2e-50 203.8 114 87.7
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.2e-50 203.8 121 76.9
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 3.0e-49 199.1 123 75.6
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 8.3e-47 191.0 191 48.2
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 3.3e-43 179.1 112 74.1
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.8e-41 173.3 93 83.9
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 8.9e-41 171.0 114 71.9
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 1.3e-39 167.2 173 49.1
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 8.3e-39 164.5 99 76.8
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 7.8e-37 157.9 122 62.3
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 5.6e-35 151.8 89 82.0
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.2e-33 145.2 178 41.0
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 1.9e-30 136.7 88 73.9
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 1.9e-30 136.7 88 73.9
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 4.1e-30 135.6 76 77.6
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.2e-29 134.0 71 81.7
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.6e-29 133.7 73 79.5
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 2.1e-29 133.3 73 80.8
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 2.1e-29 133.3 73 80.8
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 2.1e-29 133.3 73 80.8
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.1e-27 127.5 64 89.1
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 9.6e-19 97.8 59 78.0
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.8e-17 93.6 74 64.9
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.1e-13 80.1 56 71.4
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.5e-13 79.3 94 51.1
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 7.3e-11 71.6 83 49.4
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 7.3e-11 71.6 83 49.4
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 2.1e-10 70.1 71 52.1
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 8.1e-10 68.2 93 46.2
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 1.5e-08 63.9 56 55.4


User provided reference genes

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