Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 0.0e+00 1085.1 537 100.0
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 1.2e-284 982.6 530 90.6
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.4e-277 959.1 530 87.4
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 6.9e-277 956.8 566 84.6
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 9.0e-277 956.4 530 87.4
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 2.0e-276 955.3 529 90.2
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 1.0e-272 943.0 525 86.7
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 3.9e-272 941.0 524 86.8
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 1.3e-270 936.0 524 86.3
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 1.1e-269 932.9 524 85.9
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 3.4e-268 927.9 526 85.2
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 3.4e-268 927.9 523 85.7
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 5.9e-268 927.2 524 86.8
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 5.9e-268 927.2 526 85.2
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 5.9e-268 927.2 526 85.2
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 6.5e-267 923.7 524 86.1
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 1.9e-266 922.2 526 85.6
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 4.2e-266 921.0 545 82.8
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 4.2e-266 921.0 522 85.4
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 5.5e-266 920.6 524 84.9
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 3.6e-265 917.9 526 84.8
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 4.6e-265 917.5 527 84.8
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 4.6e-265 917.5 523 84.7
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 4.6e-265 917.5 526 84.8
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 6.1e-265 917.1 530 84.3
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 7.9e-265 916.8 531 83.4
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 1.4e-264 916.0 525 85.0
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 1.4e-264 916.0 526 84.2
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 2.2e-262 908.7 530 82.8
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 8.2e-262 906.7 527 83.9
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 1.8e-261 905.6 526 83.3
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.4e-261 905.2 530 82.6
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 2.4e-261 905.2 530 83.8
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 3.1e-261 904.8 530 82.6
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 5.3e-261 904.0 526 83.1
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 5.3e-261 904.0 530 82.8
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 1.2e-260 902.9 500 86.8
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 3.4e-260 901.4 530 82.6
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 5.9e-260 900.6 549 80.9
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 5.9e-260 900.6 524 83.6
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 5.9e-260 900.6 526 82.7
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 7.7e-260 900.2 521 83.9
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 1.7e-259 899.0 524 83.4
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 1.7e-259 899.0 529 83.4
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 1.7e-259 899.0 530 82.6
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 2.2e-259 898.7 524 82.8
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 2.9e-259 898.3 526 83.7
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.8e-259 897.9 524 83.4
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 5.0e-259 897.5 524 82.6
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 9.4e-258 893.3 524 82.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 7.9e-257 890.2 525 82.1
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 1.8e-256 889.0 515 82.7
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 1.1e-255 886.3 524 82.1
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 1.5e-255 885.9 524 82.1
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 5.7e-255 884.0 524 81.7
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 7.4e-255 883.6 526 81.4
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 1.3e-254 882.9 619 73.8
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.2e-254 882.1 530 81.1
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 4.1e-253 877.9 525 81.1
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 9.1e-253 876.7 525 81.7
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 2.6e-252 875.2 525 81.0
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 1.2e-249 866.3 513 80.7
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 8.0e-249 863.6 528 79.7
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 2.3e-248 862.1 511 81.2
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 4.4e-247 857.8 522 79.1
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 1.3e-246 856.3 528 79.4
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 2.8e-246 855.1 526 78.5
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 2.8e-246 855.1 531 78.5
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 1.4e-245 852.8 531 78.3
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 1.8e-245 852.4 519 80.3
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 2.6e-244 848.6 545 76.0
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 1.0e-243 846.7 549 75.4
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 1.3e-243 846.3 544 75.7
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 2.5e-242 842.0 526 77.8
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 3.2e-242 841.6 526 78.9
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 4.2e-242 841.3 530 78.7
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 1.2e-241 839.7 530 78.7
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 3.4e-239 831.6 520 80.4
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 1.8e-237 825.9 682 64.1
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 2.4e-237 825.5 530 75.7
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 3.1e-237 825.1 540 77.2
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.7e-233 812.0 524 76.0
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 3.4e-231 805.1 551 73.7
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 1.3e-230 803.1 524 74.8
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 7.2e-226 787.3 522 73.6
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 4.4e-223 778.1 576 70.7
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 2.2e-222 775.8 524 73.5
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 1.9e-218 762.7 438 83.6
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 4.0e-216 755.0 504 75.8
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 1.3e-214 750.0 652 61.8
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 6.8e-208 727.6 524 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 4.1e-205 718.4 524 67.4
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 5.4e-205 718.0 529 67.3
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 5.8e-199 698.0 503 68.6
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 7.1e-197 691.0 382 85.9
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 1.7e-195 686.4 380 87.1
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 3.3e-194 682.2 524 68.1
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 6.2e-193 677.9 512 65.8
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.0e-187 660.6 449 75.1
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 9.3e-157 557.8 320 82.2
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 7.9e-148 528.1 306 81.7
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 7.7e-143 511.5 287 88.9
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 1.7e-137 493.8 270 84.8
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 7.0e-136 488.4 334 72.8
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 3.7e-129 466.1 309 74.1
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 2.0e-127 460.3 521 48.2
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 8.3e-121 438.3 344 68.9
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 6.2e-100 369.0 257 73.2
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.8e-91 340.9 208 76.4
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 4.4e-90 336.3 185 88.1
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 8.3e-89 332.0 203 75.9
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 1.9e-72 277.7 445 38.0
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 1.1e-67 261.9 137 89.8
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 2.7e-63 247.3 137 81.8
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 1.5e-58 231.5 133 85.7
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 9.3e-56 222.2 320 42.8
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 5.6e-53 213.0 108 87.0
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 6.0e-47 193.0 137 71.5
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 3.4e-42 177.2 113 75.2
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.5e-40 171.0 109 69.7
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 6.9e-27 126.3 71 83.1
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 6.9e-27 126.3 66 84.8
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 9.1e-27 125.9 78 75.6
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 5.0e-25 120.2 267 30.7
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 1.6e-18 98.6 89 59.6
vmacro23293 Vaccinium macrocarpon HOM05D000003 ORTHO05D000006 1.6e-07 62.0 112 38.4
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 8.0e-07 59.7 55 65.5


User provided reference genes

Program Settings