Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1775.8 965 100.0
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1572.8 965 86.2
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1570.4 965 86.0
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1568.1 965 86.8
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1556.2 965 85.6
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1554.7 965 85.5
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1554.7 965 85.5
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1551.2 965 85.1
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1550.8 965 85.5
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1547.3 966 84.9
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1543.9 966 84.9
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1542.7 966 84.9
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1538.1 966 85.9
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1536.9 965 84.6
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1520.4 965 84.6
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1441.8 975 79.5
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1241.9 986 68.4
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1241.5 972 68.7
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1231.5 988 67.4
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 1049 64.5
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 990 67.0
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1227.6 989 67.9
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1223.4 977 66.8
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1223.4 977 66.8
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1217.6 998 66.2
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1216.4 1003 66.8
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1213.0 1003 66.2
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 1038 64.8
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1209.5 995 66.1
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1204.1 979 66.5
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1203.7 1026 64.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1201.4 1045 64.2
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1201.0 974 66.0
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1200.7 978 66.3
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1199.5 995 65.9
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 1044 64.6
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1192.9 971 67.6
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1192.6 1023 64.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1190.6 1027 64.9
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1189.9 1038 64.5
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 1067 62.2
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 988 65.2
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 993 65.5
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 969 66.4
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1181.8 996 64.8
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1179.9 992 65.0
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1173.3 993 64.7
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1171.4 970 65.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1170.6 979 65.1
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1169.5 1046 62.6
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1167.5 984 65.0
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1163.3 970 65.4
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1163.3 984 65.4
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1162.9 970 65.4
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1161.4 970 65.3
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1160.6 993 64.1
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1159.4 984 64.7
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1152.5 970 64.8
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1151.3 971 64.5
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1149.4 990 64.5
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1142.5 992 64.0
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1142.5 997 63.6
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1140.9 985 64.5
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1139.0 1018 61.9
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1134.4 970 63.8
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1133.2 970 63.4
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1128.2 980 63.0
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1120.9 988 62.7
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1118.2 1042 61.3
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1115.1 1040 60.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1108.6 1005 62.2
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1106.3 1164 55.7
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1105.5 997 60.9
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1102.8 974 62.1
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1099.0 980 62.8
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1078.2 976 61.6
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1078.2 818 70.5
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1077.8 992 60.4
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1075.8 908 64.9
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 1.8e-304 1049.3 973 59.5
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 3.1e-304 1048.5 963 59.7
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 5.7e-298 1027.7 985 59.9
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-296 1023.5 993 55.7
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 2.3e-291 1005.7 880 63.6
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 2.2e-289 999.2 999 56.8
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 1.4e-288 996.5 1001 55.5
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 9.2e-288 993.8 831 65.2
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 2.0e-279 966.1 859 63.4
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 2.2e-265 919.5 977 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 6.6e-262 907.9 999 51.8
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.2e-260 903.7 963 55.0
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.5e-258 896.7 1069 48.2
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 2.5e-253 879.4 1063 49.2
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 2.4e-248 862.8 992 51.4
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.7e-246 856.7 994 49.3
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.3e-217 760.8 766 57.3
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 9.7e-205 718.0 567 67.5
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.9e-200 703.7 711 57.0
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 9.7e-189 664.8 560 63.8
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 6.3e-188 662.1 550 66.9
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 7.0e-187 658.7 930 45.3
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 1.6e-186 657.5 792 52.3
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.8e-167 593.6 558 59.7
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 1.2e-159 568.2 644 52.3
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 2.2e-148 530.8 964 34.3
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 7.3e-128 462.6 379 61.7
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 2.4e-126 457.6 384 64.1
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 5.8e-125 453.0 294 78.6
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.9e-121 440.3 269 82.5
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.1e-118 432.2 277 78.3
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.3e-118 429.9 278 78.8
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.0e-118 429.1 305 68.2
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.7e-111 407.1 367 59.4
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 2.9e-108 397.5 993 30.7
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.1e-107 395.6 364 59.1
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 4.6e-98 363.6 1265 28.1
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 7.9e-98 362.8 942 30.0
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.7e-92 345.1 355 50.4
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 7.0e-78 296.6 168 85.1
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.2e-77 295.8 224 70.1
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.5e-68 263.5 290 49.7
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.0e-66 256.5 204 61.8
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.8e-65 255.4 145 86.2
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.1e-59 236.1 180 67.8
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 2.8e-58 231.5 150 78.7
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-58 231.5 220 57.3
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.5e-56 223.4 144 72.9
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-51 209.1 206 55.8
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.4e-47 193.7 129 69.8
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 9.2e-46 189.9 214 54.7
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-44 186.0 129 67.4
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 2.3e-44 185.3 105 83.8
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 5.2e-41 174.1 98 83.7
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 2.6e-40 171.8 161 58.4
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.8e-40 170.6 131 64.9
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 3.0e-36 158.3 123 67.5
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 2.2e-31 142.1 205 47.3
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.9e-31 141.0 101 66.3
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 5.4e-30 137.5 171 49.1
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.3e-27 127.9 85 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.2e-23 115.5 168 40.5
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 9.3e-22 110.2 138 48.6
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 6.0e-21 107.5 85 58.8
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 4.2e-14 84.7 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 1.3e-07 63.2 44 70.5


User provided reference genes

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