Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.3e-31 139.0 68 100.0
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 2.7e-16 88.2 71 70.4
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 2.7e-16 88.2 71 70.4
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 3.5e-16 87.8 71 69.0
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 5.9e-16 87.0 71 70.4
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.0e-15 86.3 71 69.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 1.7e-15 85.5 71 67.6
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 1.7e-15 85.5 71 69.0
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 2.2e-15 85.1 71 69.0
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 2.9e-15 84.7 71 69.0
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 2.9e-15 84.7 71 67.6
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 2.9e-15 84.7 70 62.9
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 6.5e-15 83.6 71 69.0
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 8.5e-15 83.2 71 67.6
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 9.4e-14 79.7 67 61.2
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 6.1e-13 77.0 67 61.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 6.1e-13 77.0 67 58.2
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 1.8e-12 75.5 67 58.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 2.3e-12 75.1 67 58.2
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 2.3e-12 75.1 68 58.8
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 3.0e-12 74.7 69 58.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 3.0e-12 74.7 71 59.2
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 3.0e-12 74.7 68 58.8
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 4.0e-12 74.3 67 58.2
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 4.0e-12 74.3 67 56.7
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 5.2e-12 73.9 67 58.2
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 5.2e-12 73.9 67 56.7
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 5.2e-12 73.9 71 57.7
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 6.8e-12 73.6 68 60.3
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 6.8e-12 73.6 67 55.2
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 6.8e-12 73.6 71 57.7
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 6.8e-12 73.6 67 56.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 6.8e-12 73.6 67 56.7
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 6.8e-12 73.6 68 60.3
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 8.8e-12 73.2 67 56.7
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 8.8e-12 73.2 67 58.2
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 1.2e-11 72.8 67 56.7
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.2e-11 72.8 63 58.7
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 1.2e-11 72.8 67 58.2
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.0e-11 72.0 67 55.2
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 2.0e-11 72.0 63 57.1
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 2.0e-11 72.0 63 57.1
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 2.6e-11 71.6 68 55.9
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 3.4e-11 71.2 62 59.7
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 3.4e-11 71.2 67 55.2
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 3.4e-11 71.2 67 55.2
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 3.4e-11 71.2 67 52.2
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 3.4e-11 71.2 66 57.6
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 4.4e-11 70.9 68 55.9
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 4.4e-11 70.9 68 51.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 5.7e-11 70.5 70 57.1
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 5.7e-11 70.5 68 51.5
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 5.7e-11 70.5 67 55.2
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 5.7e-11 70.5 67 55.2
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 7.5e-11 70.1 67 53.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 7.5e-11 70.1 67 53.7
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 9.8e-11 69.7 62 58.1
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 9.8e-11 69.7 62 58.1
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 9.8e-11 69.7 67 56.7
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 9.8e-11 69.7 68 54.4
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 9.8e-11 69.7 46 67.4
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 9.8e-11 69.7 66 51.5
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.7e-10 68.9 67 55.2
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.7e-10 68.9 68 55.9
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.7e-10 68.9 68 55.9
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 1.7e-10 68.9 67 53.7
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.2e-10 68.6 67 52.2
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 2.2e-10 68.6 68 51.5
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.8e-10 68.2 65 55.4
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.8e-10 68.2 67 53.7
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 2.8e-10 68.2 47 72.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.8e-10 68.2 66 50.0
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 4.8e-10 67.4 67 52.2
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 4.8e-10 67.4 47 68.1
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 4.8e-10 67.4 47 68.1
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 4.8e-10 67.4 47 66.0
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 6.3e-10 67.0 68 54.4
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 6.3e-10 67.0 47 63.8
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 8.3e-10 66.6 67 52.2
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 1.8e-09 65.5 68 52.9
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 2.4e-09 65.1 67 49.3
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 4.1e-09 64.3 69 55.1
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 4.1e-09 64.3 68 51.5
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 7.0e-09 63.5 72 50.0
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 7.0e-09 63.5 68 50.0
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 7.0e-09 63.5 68 50.0
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 9.1e-09 63.2 67 52.2
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.2e-08 62.8 67 46.3
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 5.9e-08 60.5 69 53.6
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 7.7e-08 60.1 69 53.6
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 7.7e-08 60.1 69 53.6
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 7.7e-08 60.1 69 53.6
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.7e-07 58.9 67 46.3
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.7e-07 58.9 69 52.2
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.8e-07 57.8 61 50.8
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 6.6e-07 57.0 68 48.5


User provided reference genes

Program Settings