Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G15330 Aethionema arabicum HOM05D001937 ORTHO05D003828 1.1e-74 283.1 139 100.0
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 5.6e-53 211.1 117 90.6
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 4.6e-47 191.4 133 71.4
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 2.5e-45 185.7 117 77.8
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.2e-44 183.3 117 78.6
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 4.7e-44 181.4 117 77.8
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 1.4e-43 179.9 114 78.9
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 1.5e-42 176.4 117 76.1
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 3.4e-42 175.3 116 74.1
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 1.3e-41 173.3 117 75.2
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 8.3e-41 170.6 117 71.8
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 1.9e-40 169.5 117 73.5
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 1.9e-40 169.5 117 73.5
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 1.5e-37 159.8 115 72.2
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 7.3e-37 157.5 115 70.4
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 7.3e-37 157.5 115 71.3
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 9.5e-37 157.1 115 71.3
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 9.5e-37 157.1 115 71.3
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 2.8e-36 155.6 115 68.7
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 4.0e-35 151.8 116 69.0
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 2.6e-34 149.1 118 67.8
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.3e-33 146.7 116 67.2
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 3.9e-30 135.2 101 64.4
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 4.7e-20 101.7 88 56.8
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 3.1e-19 99.0 104 52.9
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 3.1e-19 99.0 102 50.0
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 6.8e-19 97.8 87 54.0
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 8.9e-19 97.4 102 50.0
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 1.2e-18 97.1 86 53.5
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 3.4e-18 95.5 87 54.0
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 4.4e-18 95.1 102 49.0
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 1.3e-17 93.6 86 52.3
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 1.7e-17 93.2 92 51.1
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 2.2e-17 92.8 86 54.7
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 2.2e-17 92.8 86 50.0
Cpa.g.sc471.1 Carica papaya HOM05D001937 ORTHO05D003828 6.4e-17 91.3 114 46.5
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 8.4e-17 90.9 111 42.3
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 8.4e-17 90.9 84 52.4
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 1.1e-16 90.5 108 41.7
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 1.9e-16 89.7 111 41.4
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 1.9e-16 89.7 73 53.4
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 1.9e-16 89.7 105 43.8
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.4e-16 89.4 108 40.7
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 2.4e-16 89.4 89 48.3
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 4.2e-16 88.6 91 50.5
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 4.2e-16 88.6 80 52.5
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 5.4e-16 88.2 84 53.6
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 5.4e-16 88.2 99 49.5
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 5.4e-16 88.2 107 42.1
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 7.1e-16 87.8 68 55.9
FAN23G2404 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.7e-15 85.9 108 41.7
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 2.7e-15 85.9 71 53.5
Atru.chr3.3792 Acer truncatum HOM05D001937 ORTHO05D003828 6.0e-15 84.7 90 47.8
Atru.chr8.1123 Acer truncatum HOM05D001937 ORTHO05D003828 6.0e-15 84.7 86 50.0
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 6.0e-15 84.7 79 50.6
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 7.8e-15 84.3 111 39.6
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 1.3e-14 83.6 71 54.9
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 2.3e-14 82.8 103 43.7
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 3.0e-14 82.4 86 51.2
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 6.6e-14 81.3 112 43.8
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 6.6e-14 81.3 105 46.7
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 8.7e-14 80.9 92 43.5
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 1.1e-13 80.5 105 45.7
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 1.1e-13 80.5 114 39.5
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 1.5e-13 80.1 83 43.4
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 1.5e-13 80.1 84 46.4
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 1.9e-13 79.7 68 57.4
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 2.5e-13 79.3 84 50.0
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 2.5e-13 79.3 84 50.0
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 2.5e-13 79.3 93 45.2
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 2.5e-13 79.3 95 47.4
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 2.5e-13 79.3 90 42.2
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 2.5e-13 79.3 65 58.5
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 3.3e-13 79.0 82 50.0
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 4.3e-13 78.6 82 50.0
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 9.6e-13 77.4 80 50.0
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 1.3e-12 77.0 85 44.7
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.1e-12 76.3 68 52.9
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 2.1e-12 76.3 76 51.3
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 2.1e-12 76.3 93 43.0
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 2.1e-12 76.3 71 50.7
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 2.8e-12 75.9 90 41.1
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 2.8e-12 75.9 82 50.0
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 4.8e-12 75.1 82 48.8
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 4.8e-12 75.1 68 51.5
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 4.8e-12 75.1 68 51.5
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 6.2e-12 74.7 82 47.6
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 1.4e-11 73.6 96 43.8
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 2.4e-11 72.8 89 43.8
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 4.0e-11 72.0 83 44.6
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 4.0e-11 72.0 83 44.6
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 4.0e-11 72.0 93 40.9
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 4.0e-11 72.0 63 57.1
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 5.3e-11 71.6 82 48.8
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 6.9e-11 71.2 84 45.2
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 9.0e-11 70.9 68 47.1
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 1.5e-10 70.1 79 41.8
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 3.4e-10 68.9 60 56.7
Aqoxy3G01595 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 4.4e-10 68.6 69 44.9
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 4.4e-10 68.6 68 47.1
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 4.4e-10 68.6 68 47.1
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 5.8e-10 68.2 109 34.9
Hma1.2p1_1093F.1_g256120 Hydrangea macrophylla HOM05D001937 ORTHO05D003828 7.6e-10 67.8 48 68.8
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 9.9e-10 67.4 60 53.3
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 1.7e-09 66.6 84 42.9
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 2.9e-09 65.9 126 34.1
HPP92_017203 Vanilla planifolia HOM05D001937 ORTHO05D003828 8.4e-09 64.3 87 41.4
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 3.2e-08 62.4 85 35.3
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 9.3e-08 60.8 85 40.0
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 9.3e-08 60.8 85 32.9
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 1.6e-07 60.1 83 38.6
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 6.0e-07 58.2 79 41.8
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 7.9e-07 57.8 79 41.8
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.3e-06 57.0 85 38.8
CDE08G0555 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 1.7e-06 56.6 95 37.9
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.7e-06 56.6 85 38.8


User provided reference genes

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