Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 0.0e+00 1870.5 936 100.0
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 0.0e+00 1268.8 966 69.9
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 0.0e+00 1246.1 983 66.6
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 0.0e+00 1245.3 965 68.0
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 0.0e+00 1233.4 959 68.1
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 0.0e+00 1233.0 959 66.7
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 0.0e+00 1211.8 966 66.6
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 0.0e+00 1196.8 960 65.6
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 0.0e+00 1178.7 990 63.5
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 0.0e+00 1150.2 941 64.0
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 0.0e+00 1093.6 946 62.5
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 0.0e+00 1080.9 945 62.8
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 7.7e-311 1070.5 878 64.7
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 3.5e-308 1061.6 879 64.1
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.6e-305 1052.7 953 61.3
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 6.8e-304 1047.3 971 59.7
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 9.8e-303 1043.5 966 60.6
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 8.3e-302 1040.4 972 60.1
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 2.4e-301 1038.9 967 60.5
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 5.6e-282 974.5 1025 54.9
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 2.6e-279 965.7 949 55.4
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 3.3e-274 948.7 965 54.0
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 3.0e-267 925.6 959 53.3
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 4.0e-264 915.2 950 53.1
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.4e-263 912.1 961 52.4
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 3.4e-263 912.1 948 52.8
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 4.4e-263 911.8 953 53.4
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.9e-262 908.3 945 52.0
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 2.7e-260 902.5 945 52.6
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 8.7e-259 897.5 948 52.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 6.2e-257 891.3 945 51.6
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 2.4e-256 889.4 943 51.7
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 7.6e-255 884.4 968 50.8
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 9.9e-255 884.0 961 51.1
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.2e-254 882.9 949 51.7
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 4.9e-254 881.7 949 51.8
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.4e-253 880.2 806 60.7
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 9.3e-253 877.5 925 52.1
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 6.0e-252 874.8 966 50.5
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 3.9e-251 872.1 956 51.5
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.5e-250 870.2 950 52.1
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.8e-248 863.2 954 50.0
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 5.3e-248 861.7 951 50.6
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 5.3e-248 861.7 951 50.7
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 5.3e-248 861.7 956 50.8
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 1.5e-247 860.1 947 51.3
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.7e-246 856.7 937 49.7
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 4.9e-246 855.1 957 49.7
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 6.4e-246 854.7 943 49.7
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 5.5e-245 851.7 968 49.7
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 7.1e-245 851.3 947 50.6
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 9.3e-245 850.9 947 50.5
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 4.6e-244 848.6 954 50.9
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 7.9e-244 847.8 958 50.3
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 7.9e-244 847.8 964 50.1
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.9e-244 847.8 968 49.6
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.1e-242 844.0 949 50.5
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.5e-242 843.6 986 48.8
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 7.4e-242 841.3 968 49.3
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.6e-241 840.1 949 49.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.6e-241 840.1 963 50.1
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 2.8e-241 839.3 958 48.3
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 6.9e-240 834.7 962 50.2
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 2.6e-239 832.8 955 50.1
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 7.6e-239 831.2 949 49.1
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.7e-238 830.1 951 48.8
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 2.2e-238 829.7 956 49.5
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 6.5e-238 828.2 932 50.5
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.9e-237 826.6 935 49.0
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 3.2e-237 825.9 954 48.3
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.6e-236 823.5 934 49.8
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.1e-236 823.2 943 48.9
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.5e-236 822.4 947 48.3
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.3e-235 820.5 962 49.5
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.0e-235 819.3 768 58.9
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 8.7e-235 817.8 965 49.5
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 2.4e-232 809.7 942 48.7
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 2.9e-230 802.7 982 46.7
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.2e-228 797.3 944 48.7
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 3.6e-228 795.8 998 46.6
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.1e-228 795.0 1032 45.9
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 5.1e-227 792.0 944 47.7
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 6.7e-227 791.6 941 49.2
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 8.7e-227 791.2 966 47.2
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 1.5e-226 790.4 942 49.2
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 2.2e-217 760.0 688 60.5
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 6.9e-216 755.0 926 47.2
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 1.2e-215 754.2 964 46.0
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 2.9e-214 749.6 951 45.4
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 1.4e-213 747.3 688 59.9
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 3.6e-212 742.7 956 44.9
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 9.4e-205 718.0 803 49.9
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 5.2e-203 712.2 867 48.4
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.4e-200 703.4 838 48.7
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.6e-199 700.7 955 44.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.0e-198 698.0 894 46.9
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 5.2e-195 685.6 810 48.9
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 5.4e-192 675.6 946 43.3
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.4e-176 624.4 790 46.5
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.4e-168 597.0 732 46.9
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 2.0e-167 594.0 858 43.7
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.6e-164 584.3 858 42.1
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 5.1e-158 562.8 553 58.2
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 2.1e-156 557.4 722 44.2
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.3e-149 533.1 650 46.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.6e-149 532.7 583 52.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.6e-149 531.9 583 52.0
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.7e-145 521.2 864 38.9
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.2e-144 516.5 891 39.4
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.8e-140 503.1 764 41.4
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 9.9e-138 495.4 1028 34.3
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 7.1e-136 489.2 667 41.4
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 3.8e-121 440.3 931 34.0
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 1.9e-120 438.0 823 34.6
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.9e-120 438.0 937 34.5
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.3e-117 426.8 666 38.9
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.4e-115 421.0 670 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.2e-111 408.7 825 34.8
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 5.7e-109 399.8 666 39.5
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 2.2e-108 397.9 666 39.3
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.7e-108 397.1 500 44.8
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 9.1e-107 392.5 359 62.1
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 2.6e-106 391.0 349 60.5
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-97 362.5 513 41.3
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 4.2e-96 357.1 479 45.7
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.1e-91 340.5 345 51.9
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.5e-85 322.0 258 63.6
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 3.7e-84 317.4 579 36.6
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.5e-82 310.5 259 63.7
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 2.5e-80 304.7 596 35.9
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-78 298.9 240 65.4
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 3.5e-74 284.3 203 70.9
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 9.5e-72 276.2 430 43.0
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-65 256.1 346 47.1
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.4e-61 240.7 262 46.2
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.7e-58 231.5 201 54.2
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.2e-55 222.6 1185 23.0
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.6e-53 214.9 565 32.6
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-51 208.8 152 69.7
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 1.9e-43 182.2 144 64.6
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 3.2e-43 181.4 281 38.4
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 4.7e-39 167.5 193 47.7
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 8.7e-33 146.7 140 55.0
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 2.6e-29 135.2 139 53.2
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 6.4e-28 130.6 159 49.7
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.4e-27 129.4 301 30.6
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 5.4e-27 127.5 159 49.1
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 1.1e-24 119.8 81 69.1
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 4.3e-24 117.9 80 70.0
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 7.3e-24 117.1 94 61.7
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.3e-23 116.3 124 50.8
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 2.4e-19 102.1 150 41.3
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 3.2e-19 101.7 102 54.9
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 2.1e-18 99.0 134 43.3
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 3.5e-18 98.2 215 33.0
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 1.0e-17 96.7 115 48.7
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.3e-17 96.3 104 47.1
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 5.1e-17 94.4 170 33.5
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 8.7e-17 93.6 84 60.7
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.5e-16 92.8 93 54.8
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 1.5e-16 92.8 93 54.8
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 1.5e-16 92.8 93 54.8
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.3e-15 89.7 285 26.7
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 1.1e-14 86.7 79 59.5
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 1.4e-14 86.3 122 45.1
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 1.9e-11 75.9 81 54.3
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 1.9e-11 75.9 81 54.3
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 2.5e-11 75.5 107 44.9
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.5e-10 71.6 125 42.4
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 5.1e-09 67.8 122 39.3
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 1.9e-08 65.9 68 48.5
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 3.1e-06 58.5 236 24.6


User provided reference genes

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